View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10130_low_10 (Length: 257)
Name: NF10130_low_10
Description: NF10130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10130_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 51858815 - 51858672
Alignment:
| Q |
96 |
gaacatcacccaagtatgttacacgaagccatccacttgattcttcatcaatcttcaaaacacttatatccatgactaatttgcatgtattcatagcagt |
195 |
Q |
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| T |
51858815 |
gaacatcacccaagtatgttacacgaagccatctacttgattcttcatcaatcttcaaaacactgatatccatgactaatttgcatgtattcatagcagt |
51858716 |
T |
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| Q |
196 |
tcttctaaaatacatttcaaccacaaaaagacttccacgcgcct |
239 |
Q |
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| T |
51858715 |
tcttctgaaatacatttcaaccacaaaaagacttccacgcgcct |
51858672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 51859461 - 51859403
Alignment:
| Q |
26 |
aaacacatcattaagcctaatcattaactgacaatgaaaagttcaagtctttacccaaa |
84 |
Q |
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| T |
51859461 |
aaacacatcattaagcctaatcattaacagacaatgaaaagttcaagtctttacccaaa |
51859403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 43 - 232
Target Start/End: Original strand, 34864625 - 34864810
Alignment:
| Q |
43 |
taatcattaactgacaatgaaaagttcaagtctttacccaaaccaagacaaacgaacatcacccaagtatgttacacgaagccatccacttgattcttca |
142 |
Q |
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| T |
34864625 |
taatcattagcagacaatgaaaagtttaagtctttacccaaaacaa-aca---gattatcacccaagtctgttacacgaagccatctacttgattctcca |
34864720 |
T |
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| Q |
143 |
tcaatcttcaaaacacttatatccatgactaatttgcatgtattcatagcagttcttctaaaatacatttcaaccacaaaaagacttcca |
232 |
Q |
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| T |
34864721 |
tcaacgtttaaaacactgatatccatgagtaatttgcaggtattcacgccagttcttctagaatacatttcaaccacaaaaagacttcca |
34864810 |
T |
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