View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10130_low_14 (Length: 237)

Name: NF10130_low_14
Description: NF10130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10130_low_14
NF10130_low_14
[»] chr8 (4 HSPs)
chr8 (1-223)||(13078036-13078258)
chr8 (60-222)||(13098066-13098228)
chr8 (57-222)||(13114191-13114356)
chr8 (57-222)||(13103217-13103382)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 13078036 - 13078258
Alignment:
Q  1 ctttcttggcttgtagaagtaacatttatcacttcttgtgccactttttcttgtataagagggttcttgcaaagcatgtagaagaaccatgacaaagtat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13078036 ctttcttggcttgtagaagtaacatttatcacttcttgtgccactttttcttgtataagagggttcttgcaaagcatgtagaagaaccatgacaaagtat 13078135  T
Q  101 tggcacttgtgtcttttccagcaatcataaagttcagaattatgtcccttaaatatttatctgtcatatttgaggagtccttcttactttccagcaaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13078136 tggcacttgtgtcttttccagcaatcataaagttcagaattatgtcccttaaatatttatctgtcatatttgaggagtccttcttactttccagcaaaaa 13078235  T
Q  201 ccttgaaagtatatcctctttat 223  Q
    |||||||||||||||||||||||    
T  13078236 ccttgaaagtatatcctctttat 13078258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 13098066 - 13098228
Alignment:
Q  60 agggttcttgcaaagcatgtagaagaaccatgacaaagtattggcacttgtgtcttttccagcaatcataaagttcagaattatgtcccttaaatattta 159  Q
    |||||||||||| | |||||||||||||||||| | |||||| ||| | |||||||| ||||| ||||||||||| |||||||| ||||| |||||||||    
T  13098066 agggttcttgcataacatgtagaagaaccatgaaagagtatttgcagtggtgtctttgccagctatcataaagttgagaattatatccctcaaatattta 13098165  T
Q  160 tctgtcatatttgaggagtccttcttactttccagcaaaaaccttgaaagtatatcctcttta 222  Q
    || || ||| |||    | ||||||| ||||||| |||||||||||| ||||| || ||||||    
T  13098166 tcagttatagttgtttggcccttcttgctttccatcaaaaaccttgatagtatgtcttcttta 13098228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 222
Target Start/End: Original strand, 13114191 - 13114356
Alignment:
Q  57 aagagggttcttgcaaagcatgtagaagaaccatgacaaagtattggcacttgtgtcttttccagcaatcataaagttcagaattatgtcccttaaatat 156  Q
    ||||||||||||||| ||||| |||||||||||||| | |||||| ||| | |||||||| ||||| ||||||||||| |||||||| ||||| |||||     
T  13114191 aagagggttcttgcatagcatatagaagaaccatgaaagagtatttgcagtagtgtctttgccagctatcataaagttgagaattatatccctcaaatac 13114290  T
Q  157 ttatctgtcatatttgaggagtccttcttactttccagcaaaaaccttgaaagtatatcctcttta 222  Q
    ||||| || ||| |||    | | ||||| ||||||| |||||||||||| ||||| || ||||||    
T  13114291 ttatcagttatagttgtttggccattcttgctttccatcaaaaaccttgatagtatgtcttcttta 13114356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 222
Target Start/End: Original strand, 13103217 - 13103382
Alignment:
Q  57 aagagggttcttgcaaagcatgtagaagaaccatgacaaagtattggcacttgtgtcttttccagcaatcataaagttcagaattatgtcccttaaatat 156  Q
    ||||||||||||||| ||||| |||||||||||||| | ||| || ||| | || ||||| ||||| ||||||||||| |||||||| ||||| ||||||    
T  13103217 aagagggttcttgcatagcatatagaagaaccatgaaagagtgtttgcagtggtatctttgccagctatcataaagttgagaattatatccctcaaatat 13103316  T
Q  157 ttatctgtcatatttgaggagtccttcttactttccagcaaaaaccttgaaagtatatcctcttta 222  Q
    ||||| || ||| |||    | | ||||| ||||||| |||||||||||| ||||| || ||||||    
T  13103317 ttatcagttatagttgtttggccattcttgctttccatcaaaaaccttgatagtatgtcttcttta 13103382  T

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