View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10130_low_2 (Length: 487)
Name: NF10130_low_2
Description: NF10130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10130_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 16 - 487
Target Start/End: Complemental strand, 54848631 - 54848141
Alignment:
| Q |
16 |
gaaactgtacaatgtatataaaccgcatgaatgcggaagtgctagaaatattaaacaataattaacttatatatacaacatgaggaagaaagcagagtaa |
115 |
Q |
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| T |
54848631 |
gaaactgtacaatgtatataaaccgcatgaatgcggaagtgctagaaatattaaacaataattaacttatatatacaacatgaggaagaaagcagagtaa |
54848532 |
T |
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| Q |
116 |
tgaatgattctaaacacgtgtttggaatgacactgagattgtcagaattatggtgaacataataattttgacaaaaactacgttttagagcttgaataa- |
214 |
Q |
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| T |
54848531 |
tgaatgattctaaacacgtgtttggaatgacactgagattgtcagaattatggtgaacataataattttgacaaaaactacgttttagagcttgaataag |
54848432 |
T |
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| Q |
215 |
------------------atttgtcaatcaaggtcaatccaaacatgtactgattcttgtgaacatccaaataattttaagcattgacgtatgaggtagt |
296 |
Q |
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| T |
54848431 |
ataacagtgtcacgctaaatttgtcaatcaaggtcaatccaaacatgtactgattcttgtgaacatccaaataattttaagcattgacgtatgaggtagt |
54848332 |
T |
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| Q |
297 |
taattgagtgcaacttggcgcccttcgacaatgatatggattaaggttgatgaattcctttctatgagaatgtttctttcttttctttgcatcaggatgt |
396 |
Q |
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| T |
54848331 |
taattgagtgcaacttggcgcccttcgacaatgatatggattaaggttgatgaattccttcctatgagaatgtttctttcttttctttgcatcaggatgt |
54848232 |
T |
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| Q |
397 |
tttggtttcttcaaatcctcaaccgaatgtacatcttccatacaaacaaatgatcttgctttccctgagtaataccttgataatcctcctc |
487 |
Q |
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| T |
54848231 |
tttggtttcttcaaatcctcaaccgaatgtacatcttccatacaaacaaatgatcttgctttccctgagtaataccttgataatcctcctc |
54848141 |
T |
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