View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10130_low_4 (Length: 402)
Name: NF10130_low_4
Description: NF10130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10130_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 11359685 - 11359318
Alignment:
| Q |
19 |
gattggtatgctttattttctgttctgataatatggggtatcataagtactggttccgtatattgaaccctgccacgggaacaagatctaaagcatttgg |
118 |
Q |
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| T |
11359685 |
gattgttatgctttattttctgttctgataataaggagtatcataattattggtttcgtatatggaaccctgctacaggaacaagatcgaaagcattagg |
11359586 |
T |
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| Q |
119 |
gacatatcatgactataaccttcagctatacggtttgaagttcagttttggttctgaagcatttgtgagttgtgatcatgactataaccaacaaaggtct |
218 |
Q |
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| T |
11359585 |
gacaaatcatgactataaccttcagctacgcagtttgaggttcaattttggttctgaagcatttgggagttgttattatgact---accgtaggcgatat |
11359489 |
T |
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| Q |
219 |
ctattaggctctttgaagttcacttttggttgtgacattttaactggaagttacaaagtcgtggagttttgcgcaatacaagacgaggaaaacaacaatg |
318 |
Q |
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| T |
11359488 |
ctattaggttgtttgaagttcacttttggttgtggcattttaagtggaacttacaagaccgtggagtttcgtgccaaaggagatgaagaaaacaaatatg |
11359389 |
T |
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| Q |
319 |
gtctatggagaagtcatgtcagagttctcagtttgagtgatgattgttggagaaatatgaacagttttcct |
389 |
Q |
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| T |
11359388 |
gtccatggagaagtcaggtcagaattctcagtttgagcgatgattgttggagaaatatcgacagttttcct |
11359318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 281 - 392
Target Start/End: Complemental strand, 11339024 - 11338911
Alignment:
| Q |
281 |
ggagttttgcgcaatacaagacgaggaaaacaa--caatggtctatggagaagtcatgtcagagttctcagtttgagtgatgattgttggagaaatatga |
378 |
Q |
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| T |
11339024 |
ggagtttcgcgcaatacaagacgaggaaaacaaaacaatggtctatggagaagtcatgtcagagttctcagtttgagtgatgattgttggagaaatatta |
11338925 |
T |
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| Q |
379 |
acagttttcctttg |
392 |
Q |
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| T |
11338924 |
acagttttcctttg |
11338911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 216 - 392
Target Start/End: Complemental strand, 11345610 - 11345437
Alignment:
| Q |
216 |
tctctattaggctctttgaagttcacttttggttgtgacattttaactggaagttacaaagtcgtggagttttgcgcaatacaagacgaggaaaacaaca |
315 |
Q |
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| T |
11345610 |
tctctattaggatgtttgaatttcacttttggttgtgacattttaaccgaaacttacaaggtggtagagttttgcgcagaacgagatgaaggaaacaact |
11345511 |
T |
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| Q |
316 |
atggtctatggagaagtcatgtcagagttctcagtttgagtgatgattgttggagaaatatgaacagttttcctttg |
392 |
Q |
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| T |
11345510 |
ct---ccatggagaagtcgggtcagagttctcagtttgagtgatgattgttggagaaatattaacagttttcctttg |
11345437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 227 - 381
Target Start/End: Original strand, 23840265 - 23840416
Alignment:
| Q |
227 |
ctctttgaagttcacttttggttgtgacattttaactggaagttacaaagtcgtggagttttgcgcaatacaagacgaggaaaacaacaatggtctatgg |
326 |
Q |
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| T |
23840265 |
ctctttaatgttcacttttggctgtgacattttaactggaacttacaatgtgttggagttt--cacaa-agaacaagataaagacaaccatggtctattg |
23840361 |
T |
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| Q |
327 |
agaagtcatgtcagagttctcagtttgagtgatgattgttggagaaatatgaaca |
381 |
Q |
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| T |
23840362 |
aaaagtcaggtcagagttcccaatttggatgatgattgttggagaaatatcaaca |
23840416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 375
Target Start/End: Complemental strand, 23847651 - 23847515
Alignment:
| Q |
236 |
gttcacttttggttgtgacattttaactggaagttacaaagtcgtggagttttgcgcaatacaagacgaggaaaacaacaatggtctatggagaagtcat |
335 |
Q |
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|||||||||||||||||||||||||||||||| |||||| || ||||||||| | | || | | | || || ||||| ||||||||| || |||||| |
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| T |
23847651 |
gttcacttttggttgtgacattttaactggaacttacaaggtggtggagtttcgtg-aagaga--aagataaagacaaccatggtctattgaaaagtcag |
23847555 |
T |
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| Q |
336 |
gtcagagttctcagtttgagtgatgattgttggagaaata |
375 |
Q |
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| T |
23847554 |
gtcagagttctcaatttagatgatgattgctggagaaata |
23847515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 19747111 - 19747058
Alignment:
| Q |
323 |
atggagaagtcatgtcagagttctcagtttgagtgatgattgttggagaaatat |
376 |
Q |
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| T |
19747111 |
atggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatat |
19747058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 24030850 - 24030896
Alignment:
| Q |
241 |
cttttggttgtgacattttaactggaagttacaaagtcgtggagttt |
287 |
Q |
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| T |
24030850 |
cttttggttgtgacattttaactggaacttacaaggtgctggagttt |
24030896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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