View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10130_low_5 (Length: 383)

Name: NF10130_low_5
Description: NF10130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10130_low_5
NF10130_low_5
[»] chr6 (10 HSPs)
chr6 (1-369)||(32299287-32299655)
chr6 (223-369)||(32298259-32298408)
chr6 (87-164)||(32313514-32313591)
chr6 (1-46)||(7377991-7378036)
chr6 (1-46)||(9617446-9617491)
chr6 (1-46)||(9629395-9629440)
chr6 (1-35)||(30866157-30866191)
chr6 (1-46)||(7265595-7265640)
chr6 (1-46)||(9025496-9025541)
chr6 (3-35)||(13815456-13815488)
[»] chr5 (5 HSPs)
chr5 (1-44)||(30098338-30098381)
chr5 (1-46)||(22423814-22423859)
chr5 (1-50)||(23012406-23012455)
chr5 (1-46)||(28588676-28588721)
chr5 (1-29)||(9449481-9449509)
[»] chr8 (6 HSPs)
chr8 (1-46)||(12985404-12985449)
chr8 (1-46)||(14134711-14134756)
chr8 (1-45)||(31236580-31236624)
chr8 (1-50)||(7658475-7658524)
chr8 (1-46)||(12606831-12606876)
chr8 (1-29)||(29447129-29447157)
[»] chr4 (7 HSPs)
chr4 (1-46)||(8423720-8423765)
chr4 (1-35)||(46715487-46715521)
chr4 (1-34)||(2234262-2234295)
chr4 (1-54)||(43299965-43300018)
chr4 (1-54)||(43300628-43300681)
chr4 (1-29)||(12077840-12077868)
chr4 (1-29)||(24613720-24613748)
[»] chr1 (6 HSPs)
chr1 (1-50)||(1864878-1864927)
chr1 (1-46)||(2896123-2896168)
chr1 (1-35)||(6427362-6427396)
chr1 (1-46)||(36878473-36878518)
chr1 (1-46)||(44482242-44482287)
chr1 (3-44)||(46914043-46914084)
[»] chr2 (1 HSPs)
chr2 (1-48)||(18420434-18420481)
[»] scaffold0085 (1 HSPs)
scaffold0085 (1-35)||(26405-26439)
[»] chr3 (4 HSPs)
chr3 (1-35)||(9624653-9624687)
chr3 (1-81)||(15304569-15304650)
chr3 (1-46)||(39002044-39002089)
chr3 (1-29)||(12704057-12704085)
[»] scaffold0044 (1 HSPs)
scaffold0044 (1-45)||(53192-53236)
[»] chr7 (2 HSPs)
chr7 (1-108)||(21880164-21880271)
chr7 (2-46)||(22602712-22602756)


Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 32299287 - 32299655
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgttggaaaccgaccatgtcctacactaggacatgcttatttagagaaatgtccgtg 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||| |||    
32299287 aatttgagaaaatcacataattcaatgtagttatacgtgtcggtgttgaaaaccgaccatgtcctacactaagacatgcttattcagagaaatgtctgtg 32299386  T
101 cttcatagtataccacaggcattttcgacgaaacaagtctactgaatgcaaaagttgctgatactactatcagtcaggcatactgttcatgaaaaattgt 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32299387 cttcatactataccacaggcattttcgacgaaacaagtctactgaatgcaaaagttgctgatactactatcagtcaggcatactgttcatgaaaaattgt 32299486  T
201 tcaaccctaaaattatataagcaaaaggataggtccactaactggcagttgctaaatgccacaatagttgagggccagggtcaggtctaataggtcaatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32299487 tcaaccctaaaattatataagcaaaaggataggtccactaactggcagttgctaaatgccacaatagttgagggccagggtcaggtctaataggtcaatg 32299586  T
301 gacaggaaatataaatgtcagatccaaccaaaacagaaaagtaaaagttttaaaatttcaagtaaaaac 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32299587 gacaggaaatataaatgtcagatccaaccaaaacagaaaagtaaaagttttaaaatttcaagtaaaaac 32299655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 223 - 369
Target Start/End: Original strand, 32298259 - 32298408
Alignment:
223 aaaaggataggtccactaactggcagttgctaaatgccacaatagttgagggccagggtcaggtctaataggtcaatggacaggaaatataaatgtcaga 322  Q
    ||||||||||||||||| || |||| ||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||    
32298259 aaaaggataggtccacttacgggcaattgataaatgccacaatagttgagggccagggtcaggtcaaataagtcaatggacaggaaatataattgtcaga 32298358  T
323 tcca---accaaaacagaaaagtaaaagttttaaaatttcaagtaaaaac 369  Q
    ||||   ||||||| |||||||||||||||||||||||||||||||||||    
32298359 tccaatgaccaaaatagaaaagtaaaagttttaaaatttcaagtaaaaac 32298408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 32313514 - 32313591
Alignment:
87 gagaaatgtccgtgcttcatagtataccacaggcattttcgacgaaacaagtctactgaatgcaaaagttgctgatac 164  Q
    ||||||||||||||||||||||||| ||  || |||||||||| | ||||| |||||| || ||||||||||||||||    
32313514 gagaaatgtccgtgcttcatagtatgccgtagacattttcgacaagacaagcctactggatacaaaagttgctgatac 32313591  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 7377991 - 7378036
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgt 46  Q
    ||||||||||||||||||||||||||||| |||||  |||||||||    
7377991 aatttgagaaaatcacataattcaatgtaattatatgtgtcggtgt 7378036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9617446 - 9617491
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgt 46  Q
    ||||||||||||||||||||||||||||| |||||  |||||||||    
9617446 aatttgagaaaatcacataattcaatgtaattatatgtgtcggtgt 9617491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9629395 - 9629440
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgt 46  Q
    ||||||||||||||||||||||||||||| |||||  |||||||||    
9629395 aatttgagaaaatcacataattcaatgtaattatatgtgtcggtgt 9629440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30866191 - 30866157
Alignment:
1 aatttgagaaaatcacataattcaatgtagttata 35  Q
    ||||||||||||||||||||||||||||| |||||    
30866191 aatttgagaaaatcacataattcaatgtaattata 30866157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7265640 - 7265595
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgt 46  Q
    |||||||||||||||||||||||| |||| |||||  |||||||||    
7265640 aatttgagaaaatcacataattcagtgtaattatatgtgtcggtgt 7265595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 9025541 - 9025496
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgt 46  Q
    |||||||||||||||||||||||| |||| |||||  |||||||||    
9025541 aatttgagaaaatcacataattcagtgtaattatatgtgtcggtgt 9025496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 13815456 - 13815488
Alignment:
3 tttgagaaaatcacataattcaatgtagttata 35  Q
    ||||||||||||||||||||||||| |||||||    
13815456 tttgagaaaatcacataattcaatgaagttata 13815488  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30098338 - 30098381
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggt 44  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||    
30098338 aatttgagaaaatcacataattcaatgtaattatagatgtcggt 30098381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22423859 - 22423814
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgt 46  Q
    |||||||||||||||||||||||||| || ||||| ||||||||||    
22423859 aatttgagaaaatcacataattcaatataattatatatgtcggtgt 22423814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 23012455 - 23012406
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgttgga 50  Q
    ||||||||||||||| |||||| |||||| |||||  |||||||||||||    
23012455 aatttgagaaaatcatataatttaatgtaattatatgtgtcggtgttgga 23012406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28588721 - 28588676
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgt 46  Q
    |||||||||||||||||||||||| |||| |||||  |||||||||    
28588721 aatttgagaaaatcacataattcagtgtaattataggtgtcggtgt 28588676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 9449481 - 9449509
Alignment:
1 aatttgagaaaatcacataattcaatgta 29  Q
    |||||||||||||||||||||||||||||    
9449481 aatttgagaaaatcacataattcaatgta 9449509  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 12985404 - 12985449
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgt 46  Q
    ||||||||||||||||||||||||||||| | ||| ||||||||||    
12985404 aatttgagaaaatcacataattcaatgtaatcatatatgtcggtgt 12985449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14134711 - 14134756
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgt 46  Q
    |||||||||||||||||||||||| |||| ||||| ||||||||||    
14134711 aatttgagaaaatcacataattcagtgtaattatatatgtcggtgt 14134756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31236624 - 31236580
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtg 45  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||    
31236624 aatttgagaaaatcacataattcaatgtaattatatgtgtcggtg 31236580  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 7658475 - 7658524
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgttgga 50  Q
    ||||||||||||| |||||||||| |||| |||||  |||||||||||||    
7658475 aatttgagaaaattacataattcagtgtaattatatttgtcggtgttgga 7658524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12606876 - 12606831
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgt 46  Q
    ||||||||||||||| ||||||||||||| |||||  |||||||||    
12606876 aatttgagaaaatcatataattcaatgtaattatatgtgtcggtgt 12606831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 29447157 - 29447129
Alignment:
1 aatttgagaaaatcacataattcaatgta 29  Q
    |||||||||||||||||||||||||||||    
29447157 aatttgagaaaatcacataattcaatgta 29447129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8423765 - 8423720
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgt 46  Q
    |||||||||||||||||||||||| |||| ||||| ||||||||||    
8423765 aatttgagaaaatcacataattcagtgtaattataaatgtcggtgt 8423720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 46715521 - 46715487
Alignment:
1 aatttgagaaaatcacataattcaatgtagttata 35  Q
    ||||||||| |||||||||||||||||||||||||    
46715521 aatttgagacaatcacataattcaatgtagttata 46715487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 2234262 - 2234295
Alignment:
1 aatttgagaaaatcacataattcaatgtagttat 34  Q
    ||||||||||||||||||||||||||||| ||||    
2234262 aatttgagaaaatcacataattcaatgtaattat 2234295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43300018 - 43299965
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgttggaaacc 54  Q
    ||||||||||||| ||||||||||||||| | |||  || ||||||||||||||    
43300018 aatttgagaaaattacataattcaatgtaatcatatctgccggtgttggaaacc 43299965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 43300628 - 43300681
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgttggaaacc 54  Q
    ||||||||||||| ||||||||||||||| | |||  ||||| |||||||||||    
43300628 aatttgagaaaattacataattcaatgtaatcatatttgtcgctgttggaaacc 43300681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 12077840 - 12077868
Alignment:
1 aatttgagaaaatcacataattcaatgta 29  Q
    |||||||||||||||||||||||||||||    
12077840 aatttgagaaaatcacataattcaatgta 12077868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 24613748 - 24613720
Alignment:
1 aatttgagaaaatcacataattcaatgta 29  Q
    |||||||||||||||||||||||||||||    
24613748 aatttgagaaaatcacataattcaatgta 24613720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 1864927 - 1864878
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgttgga 50  Q
    |||||||||||||||||||||||| |||| |||||  |||||||||||||    
1864927 aatttgagaaaatcacataattcagtgtaattatatgtgtcggtgttgga 1864878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2896168 - 2896123
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgt 46  Q
    |||||||||||||||||||||||| ||||| |||| ||||||||||    
2896168 aatttgagaaaatcacataattcagtgtagctatatatgtcggtgt 2896123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6427362 - 6427396
Alignment:
1 aatttgagaaaatcacataattcaatgtagttata 35  Q
    ||||||||||||||||||||||||||||| |||||    
6427362 aatttgagaaaatcacataattcaatgtaattata 6427396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36878473 - 36878518
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgt 46  Q
    |||||||||||||||||||||||| |||| |||||  |||||||||    
36878473 aatttgagaaaatcacataattcagtgtaattataggtgtcggtgt 36878518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 44482242 - 44482287
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgt 46  Q
    |||||||||||||||||||||||| |||| |||||  |||||||||    
44482242 aatttgagaaaatcacataattcagtgtaattatatgtgtcggtgt 44482287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 46914084 - 46914043
Alignment:
3 tttgagaaaatcacataattcaatgtagttatacatgtcggt 44  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||    
46914084 tttgagaaaataacataattcaatgtaattataaatgtcggt 46914043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18420481 - 18420434
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgttg 48  Q
    ||||||||||||||||||||||||||| | |||||  |||||||||||    
18420481 aatttgagaaaatcacataattcaatgcaattataagtgtcggtgttg 18420434  T

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Target: scaffold0085 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 26405 - 26439
Alignment:
1 aatttgagaaaatcacataattcaatgtagttata 35  Q
    |||||||||||||||||||||||||||| ||||||    
26405 aatttgagaaaatcacataattcaatgtcgttata 26439  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9624653 - 9624687
Alignment:
1 aatttgagaaaatcacataattcaatgtagttata 35  Q
    ||||||||||||||||||||||||||||| |||||    
9624653 aatttgagaaaatcacataattcaatgtaattata 9624687  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 15304650 - 15304569
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgttggaaaccgac-catgtcctacactaggacatgctt 81  Q
    ||||| ||||||  ||||| |||||||||||||||  ||||||||| ||| |||||| | ||||| |||||| |||||||||    
15304650 aattttagaaaacaacatatttcaatgtagttatatgtgtcggtgtcggataccgacgcgtgtccaacactatgacatgctt 15304569  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39002044 - 39002089
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgt 46  Q
    ||||||| ||||||||||||||||||||| ||||| ||||| ||||    
39002044 aatttgaaaaaatcacataattcaatgtaattatatatgtcagtgt 39002089  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 12704057 - 12704085
Alignment:
1 aatttgagaaaatcacataattcaatgta 29  Q
    |||||||||||||||||||||||||||||    
12704057 aatttgagaaaatcacataattcaatgta 12704085  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 53192 - 53236
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtg 45  Q
    |||||||||||||||||||||||| |||| |||||  ||||||||    
53192 aatttgagaaaatcacataattcagtgtaattataagtgtcggtg 53236  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 21880164 - 21880271
Alignment:
1 aatttgagaaaatcacataattcaatgtagttatacatgtcggtgttggaaaccgac-catgtcctacactaggacatgcttatttagagaaatgtccgt 99  Q
    ||||||||||||| |||||||||| |||| ||| |  ||||||||| ||| | |||| ||||||| |||| |||||| || || |  ||||| |||||||    
21880164 aatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcggaca-cgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgt 21880262  T
100 gcttcatag 108  Q
    |||||||||    
21880263 gcttcatag 21880271  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 22602756 - 22602712
Alignment:
2 atttgagaaaatcacataattcaatgtagttatacatgtcggtgt 46  Q
    ||||||||||||||||||||||| |||| |||||  |||||||||    
22602756 atttgagaaaatcacataattcagtgtaattatatgtgtcggtgt 22602712  T

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