View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10130_low_9 (Length: 319)
Name: NF10130_low_9
Description: NF10130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10130_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 284
Target Start/End: Original strand, 11050372 - 11050642
Alignment:
| Q |
14 |
aagaaagaaaaaggcttcattcggtttaggagaaaggtttatgctgtatagttttgtttgtgtggaaaaattatgttggaatagagaagaaacatatgca |
113 |
Q |
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| T |
11050372 |
aagaaagaaaaaggcttcattcggtttaggagaaaggtttatgctgtatatttttgtttgtgtggaaaaattatgttggaatagagaagaaacatatgca |
11050471 |
T |
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| Q |
114 |
tttaaattatagtggtaagaggtagcactgaatgagaattttaattttaatcatcttcgcattcnnnnnnnntaatgcagagtcaagtcaattgatacaa |
213 |
Q |
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| T |
11050472 |
tttaaattatagtggtaagagggagcactgaatgagaattttaattttaattatcttcgcattcaaaaagattaatgcagagtcaagtcaattgatacaa |
11050571 |
T |
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| Q |
214 |
cagacaaagaagcacgacacatgcatgggagcaaaagtgaatcacaaaattcacaatgttatatggacttt |
284 |
Q |
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| T |
11050572 |
cagacaaagaagcacgacacatgcatgggagcaaaagtgaatcacaaaattcacaatgttatatggacttt |
11050642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 10218568 - 10218690
Alignment:
| Q |
16 |
gaaagaaaaaggcttcattcggtttaggagaaaggtttatgctgtatagttttgtttgtgtggaaaaattatgttggaatagagaagaaacatatgcatt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| ||||||||| ||||||| || |
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| T |
10218568 |
gaaagaaaaaggcttcattcggtttaggagaaaggtttatgctatata-ttttgtttgtgtggaaaaattatg-tggaacagagaagaagcatatgcgtt |
10218665 |
T |
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| Q |
116 |
taaattatagtggtaagaggtagca |
140 |
Q |
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| T |
10218666 |
caaattctagtggtaagagctagca |
10218690 |
T |
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