View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_high_1 (Length: 795)
Name: NF10131_high_1
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_high_1 |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 730; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 9 - 774
Target Start/End: Complemental strand, 35655467 - 35654702
Alignment:
| Q |
9 |
aagcaaagggaatgaagagaagatttcctgtgaaagagaactgtatagaaaggtggacatggcttaacctttggtttctgttgagcgataaaaaccactc |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35655467 |
aagcatagggaatgaagagaagatttcctgtgaaagagaactgtgtagaaaggtggacatggcttaacctttggtttctgttgagcgataaaaaccactc |
35655368 |
T |
|
| Q |
109 |
tcttccttcttatatatcacttggtggtatgattttaatggttcttataaaataacatcatagaaagaaaagtgagacacgttgcatgaattgttgttat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35655367 |
tcttccttcttatatatcacttggtggtatgattttaatggttcttataaaataacatcatagaaagaaaagtgagacacgttgcatgaattgttgttat |
35655268 |
T |
|
| Q |
209 |
ttcttcatatatttatgcaattataaattttattagcatgtagataatgatataggagatgaaaagaggtttgtgtgtatagattaatttgaagaaataa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
35655267 |
ttcttcatatatttatgcaattataaattttattagcatgtagataatgatataggagataaaaagaggtttgtgtgtataggttaatttgaagaaataa |
35655168 |
T |
|
| Q |
309 |
aaaagagagagaggagaaaatacatatattttatgtgacttaaatatgtttgtgaaatagcaaaaatttataaaatacttttatgaatattttaaaagat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35655167 |
aaaagagagagaggagaaaatacatatattttatgtgacttaaatatgtttgtgaaatagcaaaaatttataaaatacttttatgaatattttaaaagat |
35655068 |
T |
|
| Q |
409 |
tagccacaattataattgaataaaagagtgattgttgattaaaatgtgaaaggtcacatgcataatacattgaacttattcttgtgtaaatggtccatgc |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35655067 |
tagccacaattataattgaataaaagagtgattgttgattaaaatgtgaaaggtcacatgcataatacattgaacttattcttgtgtaaatggtccatgc |
35654968 |
T |
|
| Q |
509 |
tatgttttttataaaccaatagtgtggttatgataattgatgagagttgacactagagattactgttgacatggtattgatgtgcaagtgaatgtgataa |
608 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35654967 |
tatgttttttataaaccaatggtgtggttatgataattgatgagagttgacactagagattactgttgacatggtattgatgtgcaagtgaatgtgataa |
35654868 |
T |
|
| Q |
609 |
aataagtaaaactttttgtgctcatttcactactagaaatttgtttattttcctccggattctgacataaaaaatctgatgaaagcatgttttctgagga |
708 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35654867 |
aataagtaaaaaaatttgtgctcatttcactactagaaatttgtttattttcctccggattctgacataaaaaatctgatgaaaacatgttttctgagga |
35654768 |
T |
|
| Q |
709 |
atttcatgcggattttagtcctcatgtaaaacatcaagtgagtaatcatttaattcaggagtcccc |
774 |
Q |
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| T |
35654767 |
atttcatgcggattttagtcctcatgtaaaacatcaagtgagtaatcatttaattcaggagtcccc |
35654702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 35646031 - 35645894
Alignment:
| Q |
17 |
ggaatgaagagaagatttcctgtgaaagagaactgtatagaaaggtggacatggcttaacctttggtttctgttgagcgataaaaaccactctcttcctt |
116 |
Q |
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||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||| |
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| T |
35646031 |
ggaatgaagagaagatttcatgtgaaagagaacttggcagaatggtggacatggcttaagctttggtttttgttgagtgataaaaaccactctcttcctt |
35645932 |
T |
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| Q |
117 |
cttatatatcacttggtggtatgattttaatggttctt |
154 |
Q |
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| T |
35645931 |
cttatatatcacttggtgctatgattttattggttctt |
35645894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 35676534 - 35676451
Alignment:
| Q |
10 |
agcaaagggaatgaagagaagatttcctgtgaaagagaactgtatagaaaggtggacatggcttaacctttggtttctgttgag |
93 |
Q |
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|||| ||||||||||||||||||||| ||||||||| |||| | |||||| ||||||||||||||| ||||||||||| ||||| |
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| T |
35676534 |
agcatagggaatgaagagaagatttcatgtgaaagaaaactttgtagaaatgtggacatggcttaagctttggtttctattgag |
35676451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 35672993 - 35672913
Alignment:
| Q |
40 |
gaaagagaactgtatagaaaggtggacatggcttaaccttt----ggtttctgttgagcgataaaaaccactctcttcctt |
116 |
Q |
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| T |
35672993 |
gaaagagaattttgtagaaaggtggacatggcttaacctttggttggtttctgttgagcaacaaaaaccactctcttcctt |
35672913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 4274 - 4173
Alignment:
| Q |
9 |
aagcaaagggaatgaagagaagatttcctgtgaaagagaactgtatagaaaggtggacatggcttaaccttt-ggtttctgttgagcgataaaaaccact |
107 |
Q |
| |
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||||| |||||||||| ||||| |||| || |||||||||| | |||||||||||||||||||||| |||| |||||||| | ||||||||||||| |
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| T |
4274 |
aagcatagggaatgaatagaagctttcatgcgaaagagaacattgtagaaaggtggacatggcttaagctttaattttctgtttaatgataaaaaccact |
4175 |
T |
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| Q |
108 |
ct |
109 |
Q |
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|| |
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| T |
4174 |
ct |
4173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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