View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10131_high_16 (Length: 294)

Name: NF10131_high_16
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10131_high_16
NF10131_high_16
[»] chr6 (1 HSPs)
chr6 (17-282)||(15357795-15358060)
[»] chr2 (1 HSPs)
chr2 (17-282)||(28656564-28656829)
[»] chr1 (1 HSPs)
chr1 (17-282)||(20262733-20262998)
[»] scaffold0576 (1 HSPs)
scaffold0576 (17-282)||(2784-3034)
[»] chr8 (1 HSPs)
chr8 (17-282)||(3732342-3732592)
[»] chr7 (1 HSPs)
chr7 (17-282)||(2753502-2753752)
[»] scaffold0002 (2 HSPs)
scaffold0002 (41-284)||(289747-289971)
scaffold0002 (41-284)||(282812-283036)
[»] chr4 (2 HSPs)
chr4 (41-284)||(18197826-18198050)
chr4 (30-102)||(24861596-24861668)


Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 15357795 - 15358060
Alignment:
Q  17 attaatttggggtttgtgatacagattaatcaaattctatgtgaggcaagtggtgaacacaatcttccattgataagaaggtaaatatttttcctttcct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15357795 attaatttggggtttgtgatacagattaatcaaattctatgtgaggcaagtggtgaacacaatcttccattcataagaaggtaaatatttttcctttcct 15357894  T
Q  117 ttcccatattggtagtgtaggtgcggccgcttagaattggtcttaagtttgtgcatttggtgtgttctgttaacattgcagggatgttttggttagggat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  15357895 ttcccatattggtagtgtaggtgcggccgcttagaattggtcttaagtttgtgcatttggtgtgttctgttaacattgcaaggatgtattggttagggat 15357994  T
Q  217 gtttggtgtgaaataacctgcagaattttgcattggtggatcagatttgtgttgttgtgttgtctc 282  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||    
T  15357995 gtttggtgtgaaataacctgcagaattttgcagtagtggatcagatttgtgttgttttgttgtctc 15358060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 28656564 - 28656829
Alignment:
Q  17 attaatttggggtttgtgatacagattaatcaaattctatgtgaggcaagtggtgaacacaatcttccattgataagaaggtaaatatttttcctttcct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  28656564 attaatttggggtttgtgatacagattaatcaaattctatgtgaggcaattggtgaacacagtcttccattgataagaaggtaaatgtttttcctttcct 28656663  T
Q  117 ttcccatattggtagtgtaggtgcggccgcttagaattggtcttaagtttgtgcatttggtgtgttctgttaacattgcagggatgttttggttagggat 216  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28656664 ttcccattttggtagtgtaggtgcggccgcttagaattggtcttaagtttgtgcatttggtgtgttctgttaacattgcagggatgtattggttagggat 28656763  T
Q  217 gtttggtgtgaaataacctgcagaattttgcattggtggatcagatttgtgttgttgtgttgtctc 282  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  28656764 gtttggtgtgaaataacctgcagaattttgcagtggtggatcagatttgtgttgttttgttgtctc 28656829  T

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Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 20262733 - 20262998
Alignment:
Q  17 attaatttggggtttgtgatacagattaatcaaattctatgtgaggcaagtggtgaacacaatcttccattgataagaaggtaaatatttttcctttcct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  20262733 attaatttggggtttgtgatacagattaatcaaattctatgtgaggcaattggtgaacacagtcttccattgataagaaggtaaatgtttttcctttcct 20262832  T
Q  117 ttcccatattggtagtgtaggtgcggccgcttagaattggtcttaagtttgtgcatttggtgtgttctgttaacattgcagggatgttttggttagggat 216  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  20262833 ttcccattttggtagtgtaggtgcggccgcttagaattggtcttaagtttgtgcatttggtgtgttctgttaacattgcaaggatgtattggttagggat 20262932  T
Q  217 gtttggtgtgaaataacctgcagaattttgcattggtggatcagatttgtgttgttgtgttgtctc 282  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  20262933 gtttggtgtgaaataacctgcagaattttgcagtggtggatcagatttgtgttgttttgttgtctc 20262998  T

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Target: scaffold0576 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 2784 - 3034
Alignment:
Q  17 attaatttggggtttgtgatacagattaatcaaattctatgtgaggcaagtggtgaacacaatcttccattgataagaaggtaaatatttttcctttcct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2784 attaatttggggtttgtgatacagattaatcaaattctatgtgaggcaagtggtgaacacaatcttccattcataagaaggtaaatatttttcctttcct 2883  T
Q  117 ttcccatattggtagtgtaggtgcggccgcttagaattggtcttaagtttgtgcatttggtgtgttctgttaacattgcagggatgttttggttagggat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||    
T  2884 ttcccatattggtagtgtaggtgcggccgcttagaattggtcttaagtttgtgcatttggtgtgttctgttaacattgc---------------agggat 2968  T
Q  217 gtttggtgtgaaataacctgcagaattttgcattggtggatcagatttgtgttgttgtgttgtctc 282  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||    
T  2969 gtttggtgtgaaataacctgcagaattttgcagtagtggatcagatttgtgttgttttgttgtctc 3034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 3732342 - 3732592
Alignment:
Q  17 attaatttggggtttgtgatacagattaatcaaattctatgtgaggcaagtggtgaacacaatcttccattgataagaaggtaaatatttttcctttcct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3732342 attaatttggggtttgtgatacagattaatcaaattctatgtgaggcaagtggtgaacacaatcttccattcataagaaggtaaatatttttcctttcct 3732441  T
Q  117 ttcccatattggtagtgtaggtgcggccgcttagaattggtcttaagtttgtgcatttggtgtgttctgttaacattgcagggatgttttggttagggat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||    
T  3732442 ttcccatattggtagtgtaggtgcggccgcttagaattggtcttaagtttgtgcatttggtgtgttctgttaacattgc---------------agggat 3732526  T
Q  217 gtttggtgtgaaataacctgcagaattttgcattggtggatcagatttgtgttgttgtgttgtctc 282  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||    
T  3732527 gtttggtgtgaaataacctgcagaattttgcagtagtggatcagatttgtgttgttttgttgtctc 3732592  T

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Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 2753752 - 2753502
Alignment:
Q  17 attaatttggggtttgtgatacagattaatcaaattctatgtgaggcaagtggtgaacacaatcttccattgataagaaggtaaatatttttcctttcct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2753752 attaatttggggtttgtgatacagattaatcaaattctatgtgaggcaagtggtgaacacaatcttccattcataagaaggtaaatatttttcctttcct 2753653  T
Q  117 ttcccatattggtagtgtaggtgcggccgcttagaattggtcttaagtttgtgcatttggtgtgttctgttaacattgcagggatgttttggttagggat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
T  2753652 ttcccatattggtagtgtaggtgcggccgcttagaattggtcttaagtttgtgcatttggtgtgttctgttaacattgcagggat--------------- 2753568  T
Q  217 gtttggtgtgaaataacctgcagaattttgcattggtggatcagatttgtgttgttgtgttgtctc 282  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||    
T  2753567 gtttggtgtgaaataacctgcagaattttgcagtagtggatcagatttgtgttgttttgttgtctc 2753502  T

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Target: scaffold0002 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 41 - 284
Target Start/End: Complemental strand, 289971 - 289747
Alignment:
Q  41 attaatcaaattctatgtgaggcaagtggtgaacacaatcttccattgataagaaggtaaatatttttcctttcctttcccatattggtagtgtaggtgc 140  Q
    ||||||| ||||||||||||||| ||||||||||||||||    ||||| || |||||||||||||||||||||||| | | | | |||||||||| ||     
T  289971 attaatcgaattctatgtgaggctagtggtgaacacaatc----attgagaaaaaggtaaatatttttcctttccttccacgtttcggtagtgtagttgt 289876  T
Q  141 ggccgcttagaattggtcttaagtttgtgcatttggtgtgttctgttaacattgcagggatgttttggttagggatgtttggtgtgaaataacctgcaga 240  Q
    ||| |||| ||||||||||| ||||||||||| |||||||||||| |||| ||||||||||               |||||| |||||| ||| ||||||    
T  289875 ggctgcttggaattggtcttcagtttgtgcatctggtgtgttctgctaacgttgcagggat---------------gtttggagtgaaacaacatgcaga 289791  T
Q  241 attttgcattggtggatcagatttgtgttgttgtgttgtctctg 284  Q
    ||| |||| | ||||||||||||||||||||| |||||||||||    
T  289790 attctgcagtagtggatcagatttgtgttgttttgttgtctctg 289747  T

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Target: scaffold0002; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 41 - 284
Target Start/End: Complemental strand, 283036 - 282812
Alignment:
Q  41 attaatcaaattctatgtgaggcaagtggtgaacacaatcttccattgataagaaggtaaatatttttcctttcctttcccatattggtagtgtaggtgc 140  Q
    ||||||| ||||||||||||||| ||||||||||||||||    ||||| || ||||||||| |||||||||||||| | | | | |||||||||| ||     
T  283036 attaatcgaattctatgtgaggctagtggtgaacacaatc----attgagaaaaaggtaaatttttttcctttccttccacgtttcggtagtgtagttgt 282941  T
Q  141 ggccgcttagaattggtcttaagtttgtgcatttggtgtgttctgttaacattgcagggatgttttggttagggatgtttggtgtgaaataacctgcaga 240  Q
    ||| |||| ||||||||||| ||||||||||| |||||||||||| |||| ||||||||||               |||||| |||||| ||| ||||||    
T  282940 ggctgcttggaattggtcttcagtttgtgcatctggtgtgttctgctaacgttgcagggat---------------gtttggagtgaaacaacatgcaga 282856  T
Q  241 attttgcattggtggatcagatttgtgttgttgtgttgtctctg 284  Q
    ||| |||| | ||||||||||||||||||||| |||||||||||    
T  282855 attctgcagtagtggatcagatttgtgttgttttgttgtctctg 282812  T

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Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 41 - 284
Target Start/End: Original strand, 18197826 - 18198050
Alignment:
Q  41 attaatcaaattctatgtgaggcaagtggtgaacacaatcttccattgataagaaggtaaatatttttcctttcctttcccatattggtagtgtaggtgc 140  Q
    ||||||| ||||||||||||||| ||||||||||||||||    ||||| || |||||||||||||||||||||||| | | | | |||||||||| ||     
T  18197826 attaatcgaattctatgtgaggctagtggtgaacacaatc----attgagaaaaaggtaaatatttttcctttccttccacgtttcggtagtgtagttgt 18197921  T
Q  141 ggccgcttagaattggtcttaagtttgtgcatttggtgtgttctgttaacattgcagggatgttttggttagggatgtttggtgtgaaataacctgcaga 240  Q
    ||| |||| ||||||||||| ||||||||||| |||||||||||| |||| ||||               |||||||||||| |||||| ||| ||||||    
T  18197922 ggctgcttggaattggtcttcagtttgtgcatctggtgtgttctgctaacgttgc---------------agggatgtttggagtgaaacaacatgcaga 18198006  T
Q  241 attttgcattggtggatcagatttgtgttgttgtgttgtctctg 284  Q
    ||| |||| | ||||||||||||||||||||| |||||||||||    
T  18198007 attctgcagtagtggatcagatttgtgttgttttgttgtctctg 18198050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 24861596 - 24861668
Alignment:
Q  30 ttgtgatacagattaatcaaattctatgtgaggcaagtggtgaacacaatcttccattgataagaaggtaaat 102  Q
    ||||||| |||||||||| ||||||  |||||||||||||||||| |  ||||||||| | ||||||||||||    
T  24861596 ttgtgatgcagattaatcgaattcttagtgaggcaagtggtgaacgccttcttccattaagaagaaggtaaat 24861668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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