View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10131_high_20 (Length: 270)
Name: NF10131_high_20
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_high_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 41939372 - 41939121
Alignment:
| Q |
1 |
attgaggaataatgggagtgtgagatggttttgaagtgaaagttggattaattagggcattaagtgctacatttacagcacaagtatggtgatggtggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41939372 |
attgaggaataatgggagtgtgagatggttttgaagtgaaagttggattaattagggcattaagtgctacatttacagcacaagtatggtgatggtggag |
41939273 |
T |
|
| Q |
101 |
agaggtagtagtagaaataggtatttgatgtaagggagggatagtagtactaatagtgggatgagggggtgtgagtttgggaggtatttggtggccagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41939272 |
agaggtagtagtagaaataggtatttgatgcaagggagggatagtagtactaatagtgggatgagggggtgtgagtttgggaggtatttggtggccagga |
41939173 |
T |
|
| Q |
201 |
ggagcaagagagaggaagatggaatcttcatcatctaagctgctgctgcaag |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41939172 |
ggagcaagagagaggaagatggaatcttcatcatctaagctgctgctgcaag |
41939121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University