View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_high_24 (Length: 260)
Name: NF10131_high_24
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 2839926 - 2840154
Alignment:
| Q |
16 |
agggttagggttgagaagtgttgaattccaaggttagaaatgagatcggaatcgttttgtccgagactcagagaaaggaagagacgttgatcggaaacag |
115 |
Q |
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| T |
2839926 |
agggttagggttgagaagggttgaattccaaggttagagatgagatcggaatcgttttgtccgagactcagagaaaggaagagacgttgatcggaaacag |
2840025 |
T |
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| Q |
116 |
gcatgccattgaattgttggatcgcgatcttcagttcatggagagtggtggcgttagggtttacgtctaatgcaaacttttcgccgttcggtagcacaat |
215 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2840026 |
gcatgccattgaattgttggatcgcgaccttcagttgatggagagtggtggcgttagggtttacgtctaatgcaaacttttcgccgtttggtagcacaat |
2840125 |
T |
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| Q |
216 |
caataccattgtctccttcacgtcttttt |
244 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
2840126 |
caataccattgtctccttcacgtcctttt |
2840154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 2373414 - 2373204
Alignment:
| Q |
16 |
agggttagggttgagaagtgttgaattccaaggttagaaatgagatcggaatcgttttgtccgagactcagagaaaggaagagacgttgatcggaaacag |
115 |
Q |
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|||||||||||||||||| || ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||| |||| |||||||| |
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| T |
2373414 |
agggttagggttgagaagggtccaattccaaggttagagatgagatcagaatcgttttgtccgagactcagagaaaagaagagacgctgattggaaacag |
2373315 |
T |
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| Q |
116 |
gcatgccattgaattgttggatcgcgatcttcagttcatggagagtggtggcgttagggtttacgtctaatgcaaacttttcgccgttcggtagcacaat |
215 |
Q |
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| T |
2373314 |
gcatgccgttgaattgttggatcgcgaccttcagctgatggagagtggtggtgttagggtttacgtctaaggaaaacttttcgccgctcggtggcacaat |
2373215 |
T |
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| Q |
216 |
caataccattg |
226 |
Q |
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|||||||||| |
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| T |
2373214 |
gaataccattg |
2373204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 2382657 - 2382867
Alignment:
| Q |
16 |
agggttagggttgagaagtgttgaattccaaggttagaaatgagatcggaatcgttttgtccgagactcagagaaaggaagagacgttgatcggaaacag |
115 |
Q |
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|||||||||||||||||| || ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||| |||| |||||||| |
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| T |
2382657 |
agggttagggttgagaagggtccaattccaaggttagagatgagatcagaatcgttttgtccgagactcagagaaaagaagagacgctgattggaaacag |
2382756 |
T |
|
| Q |
116 |
gcatgccattgaattgttggatcgcgatcttcagttcatggagagtggtggcgttagggtttacgtctaatgcaaacttttcgccgttcggtagcacaat |
215 |
Q |
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||||||| ||||||||||||||||||| |||||| | |||||||||||||| |||||||||||||||||| | ||||||||||||| ||||| ||||||| |
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| T |
2382757 |
gcatgccgttgaattgttggatcgcgaccttcagctgatggagagtggtggtgttagggtttacgtctaaggaaaacttttcgccgctcggtggcacaat |
2382856 |
T |
|
| Q |
216 |
caataccattg |
226 |
Q |
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|||||||||| |
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| T |
2382857 |
gaataccattg |
2382867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 1163455 - 1163408
Alignment:
| Q |
144 |
cttcagttcatggagagtggtggcgttagggtttacgtctaatgcaaa |
191 |
Q |
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|||||| | |||||||||||| |||||||||||||||||||| ||||| |
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| T |
1163455 |
cttcaggtgatggagagtggtagcgttagggtttacgtctaaggcaaa |
1163408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 1526408 - 1526618
Alignment:
| Q |
16 |
agggttagggttgagaagtgttgaattccaaggttagaaatgagatcggaatcgttttgtccgagactcagagaaaggaagagacgttgatcggaaacag |
115 |
Q |
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|||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| || |||| ||||||||| |||| |||||||| |
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| T |
1526408 |
agggttagggttgagaagggtccaattccaaggttagagatgagatcggaatcgttttgtccgaggcttccggaaaagaagagacgctgattggaaacag |
1526507 |
T |
|
| Q |
116 |
gcatgccattgaattgttggatcgcgatcttcagttcatggagagtggtggcgttagggtttacgtctaatgcaaacttttcgccgttcggtagcacaat |
215 |
Q |
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||||||| ||||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||| | |||||| |||||| ||||| ||||||| |
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| T |
1526508 |
gcatgccgttgaattgttggatcgcgaccttcaactgatggacagtggtggcgttagggtttacgtctaaggaaaacttctcgccgctcggtggcacaat |
1526607 |
T |
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| Q |
216 |
caataccattg |
226 |
Q |
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|||||||||| |
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| T |
1526608 |
gaataccattg |
1526618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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