View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10131_high_3 (Length: 448)
Name: NF10131_high_3
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 135 - 438
Target Start/End: Complemental strand, 2104969 - 2104666
Alignment:
| Q |
135 |
ctctctatgatttttcaactccgagtctagctctaatgtgtttgttaagagtccacagcagtagtagtagtataaatagtaaaactgatcggtttgttat |
234 |
Q |
| |
|
|||||||||||||||||||||| | || || |||||||||||||||| |||||||||| | || || |||| |||||||| ||||||||||||||| |
|
|
| T |
2104969 |
ctctctatgatttttcaactccaattccaggtctaatgtgtttgtta-gagtccacagtacta----tactata--tagtaaaattgatcggtttgttat |
2104877 |
T |
|
| Q |
235 |
aacaaattctgaaaccggatttcaaattttttattaaccagaataaattctttacgacaacaactatggacagtaataaaaactaaccaaggtaaatgta |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2104876 |
aacaaattctgaaaccggatttcaaattttttattaaccagaataaattctttactacaacaactatggacagtaataaaaactaaccaaggtaaatgta |
2104777 |
T |
|
| Q |
335 |
ataaagagcatggcagtaataatggctatcctatgtcaccaatgtactattcattttgaaacttg-------ttgacagaattttgaaacttgatgttgt |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2104776 |
ataaagagcatggcagtaataatggctatcctatgtcaccaatgtactattcattttgaaacttggtgttttttgacagaattttgaaacttgatgttgt |
2104677 |
T |
|
| Q |
428 |
tgtgtcctatg |
438 |
Q |
| |
|
||||| ||||| |
|
|
| T |
2104676 |
tgtgtactatg |
2104666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 2096285 - 2096001
Alignment:
| Q |
12 |
agagacgacaacaacaatcaagttttatctcgctaagtagaatcggctacaaataatacattgttctataaataaatnnnnnnnntagcagaagaataaa |
111 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2096285 |
agagacgacaacaacaattaagttttatctccctaagtagaatcggctacaaataatacattgttctataaataaataaaaaaa-tagcagaagaataaa |
2096187 |
T |
|
| Q |
112 |
ggaagaagaa---------aattcacctctcgctctctatgatttttcaactccgagtctagctctaatgtgtttgttaagagtccacagcagtagtagt |
202 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||| ||||||||| |
|
|
| T |
2096186 |
ggaagaagaagaagaagaaaattcacctctcgctctctatgatttttcaactccaagtctagctctaatgtgtttgtta-gagtccgcagtagtagtagt |
2096088 |
T |
|
| Q |
203 |
agtataaatagtaaaactgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccagaataaattctttac |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2096087 |
agtataaatagtaaaactgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccagagtaaattctttac |
2096001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 297 - 399
Target Start/End: Complemental strand, 2085947 - 2085845
Alignment:
| Q |
297 |
actatggacagtaataaaaactaaccaaggtaaatgtaataaagagcatggcagtaataatggctatcctatgtcaccaatgtactattcattttgaaac |
396 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2085947 |
actatggacagtaataaaaaccaaccatggtaaatgtaataatgagcatggcagaaataatagcaatcctatgtcaccaatgtactattcattttgaaac |
2085848 |
T |
|
| Q |
397 |
ttg |
399 |
Q |
| |
|
||| |
|
|
| T |
2085847 |
ttg |
2085845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 2052826 - 2052765
Alignment:
| Q |
215 |
aaaactgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccaga |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
2052826 |
aaaactgatcggtttgttataacaaattctgaaaccggatttcaaataatttatgaaccaga |
2052765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 45317627 - 45317584
Alignment:
| Q |
19 |
acaacaacaatcaagttttatctcgctaagtagaatcggctaca |
62 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| ||||||||| |
|
|
| T |
45317627 |
acaacaacaatcaagttttatctcactaattagagtcggctaca |
45317584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University