View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10131_high_37 (Length: 239)

Name: NF10131_high_37
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10131_high_37
NF10131_high_37
[»] chr7 (1 HSPs)
chr7 (167-215)||(22301265-22301313)
[»] chr6 (1 HSPs)
chr6 (167-215)||(15517918-15517966)
[»] chr8 (1 HSPs)
chr8 (27-57)||(33941060-33941090)
[»] chr1 (1 HSPs)
chr1 (185-219)||(12141840-12141874)
[»] chr3 (1 HSPs)
chr3 (1-30)||(26279094-26279123)
[»] chr4 (1 HSPs)
chr4 (29-57)||(6668320-6668348)
[»] chr2 (1 HSPs)
chr2 (29-57)||(8424057-8424085)


Alignment Details
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 22301313 - 22301265
Alignment:
Q  167 ctgcccatagcatacatttatatactccctcacttcatatttatctata 215  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  22301313 ctgcacatagcatacatttaaatactccctcacttcatatttatctata 22301265  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 15517918 - 15517966
Alignment:
Q  167 ctgcccatagcatacatttatatactccctcacttcatatttatctata 215  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  15517918 ctgcacatagcatacatttatacactccctcacttcatatttatctata 15517966  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 57
Target Start/End: Complemental strand, 33941090 - 33941060
Alignment:
Q  27 atattgttgtaatttttgtatatttcaaaag 57  Q
    |||||||||||||||||||||||||||||||    
T  33941090 atattgttgtaatttttgtatatttcaaaag 33941060  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 12141874 - 12141840
Alignment:
Q  185 tatatactccctcacttcatatttatctatataca 219  Q
    ||||||||||||||||||||||||||||| |||||    
T  12141874 tatatactccctcacttcatatttatctacataca 12141840  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 26279094 - 26279123
Alignment:
Q  1 gtttggttttcagtaaccagatacatatat 30  Q
    ||||||||||||||||||||||||||||||    
T  26279094 gtttggttttcagtaaccagatacatatat 26279123  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 6668348 - 6668320
Alignment:
Q  29 attgttgtaatttttgtatatttcaaaag 57  Q
    |||||||||||||||||||||||||||||    
T  6668348 attgttgtaatttttgtatatttcaaaag 6668320  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 8424057 - 8424085
Alignment:
Q  29 attgttgtaatttttgtatatttcaaaag 57  Q
    |||||||||||||||||||||||||||||    
T  8424057 attgttgtaatttttgtatatttcaaaag 8424085  T

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