View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_high_40 (Length: 236)
Name: NF10131_high_40
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_high_40 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 39833566 - 39833340
Alignment:
| Q |
13 |
aaatctaaaccccctt---gcattcatataaaacagatcagtgataaaatactatggcaaaatccatcaaacattcttagaactaacagacattttagtg |
109 |
Q |
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| T |
39833566 |
aaatctaaaccccctccaagcattcatataaaacagatcagtgataaaatactatggcaaaatccatcaaacattcttagaactaacagacattttagtg |
39833467 |
T |
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| Q |
110 |
aaatatcatgaataggcatagttgaaggtgaatcacatgatcgagattagataaaaagatgaaatcttagtgaaatcaccatgaacacattacaaattga |
209 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39833466 |
aaatatcatgaacaggcatagttgaaggtgaatcacatgatcgagattagataaatagatgaaatcttagtgaaatcaccatgaacacattacaaattga |
39833367 |
T |
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| Q |
210 |
gattacgaaccctaagatgaaggatcc |
236 |
Q |
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| T |
39833366 |
gattacgaaccctaagatgaaggatcc |
39833340 |
T |
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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 27057924 - 27058001
Alignment:
| Q |
29 |
gcattcatataaaacagatcagtgataaaatactatggcaaaa-tccatcaaacattcttagaactaacagacatttt |
105 |
Q |
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|||||||||||| ||| ||||||||||||||||||||| |||| |||||||| |||||||| |||||||| ||||||| |
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| T |
27057924 |
gcattcatataacacaaatcagtgataaaatactatggaaaaattccatcaagcattcttaaaactaacaaacatttt |
27058001 |
T |
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