View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_high_6 (Length: 422)
Name: NF10131_high_6
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Original strand, 31603416 - 31603811
Alignment:
| Q |
18 |
tggacatctcccgaccaaacaaagtttcgcagataatgatctagcaattcaatcaaagaaattgacctcacatttatttcaaaactaaaaataagcatac |
117 |
Q |
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| T |
31603416 |
tggacatctcccgaccaaacaaagtttcgcagataatgatctagcaattcaatcaaagaaattgacctcacatttatttcaaaactacaaataagcatac |
31603515 |
T |
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| Q |
118 |
catgaatgacagacttgactaactgaatccttcccattatggataaatgatagagtaccagcagtgaattcccagtgtattcgagaataagattttgatt |
217 |
Q |
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| T |
31603516 |
catgaatgacagacttgactaactgaatccttcccattatggataaatgatagagtaccagcagtgaattcccagtgtattcgagaataagattttgatt |
31603615 |
T |
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| Q |
218 |
tatcaaagctaatcaatttgccagagcattcgccatgccctcctataatggttcacaagctatatcaaacctcgtttacctttgcaaaaaatcatgatat |
317 |
Q |
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| T |
31603616 |
tgtcaaagctaatcaatttgccagagcattcgccatgccctcctataatggttcacgggctatatcaaacctcgtttacctttgcaaaaaatcatgatat |
31603715 |
T |
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| Q |
318 |
cgtatacatattagacgtgagtaggggtttggagtcccctgcgactaccatgcgatgcagcatacctttgaaaccaactgagaaatacctatgctt |
413 |
Q |
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| T |
31603716 |
cgtatacatattagacgtgagtaggggtttggagtcccctacgactaccatgcgatgcagcatacctttgaaaccaactgagaaatacctatgctt |
31603811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 31605875 - 31606064
Alignment:
| Q |
20 |
gacatctcccgaccaaacaaagtttcgcagataatgatctagcaattcaatcaaagaaattga--------cctcacatttatttcaaaactaaaaataa |
111 |
Q |
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| T |
31605875 |
gacatctcctgaccaaaataggttttgcaggtaatgaaccagcaattcaatcaaagaaattgggaaattggctacacatttattttaaaactacaaataa |
31605974 |
T |
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| Q |
112 |
gcataccatgaatgacagacttgactaactgaatccttcccattatggataaatgat----agagtaccagcagtgaattcccagtgtatt |
198 |
Q |
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| T |
31605975 |
gcataccatgaa-gacagacttgactaatcgagtccttccagttatggataaatgatagggagagtaccggcagtaaattcccagtgtatt |
31606064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 201 - 272
Target Start/End: Original strand, 31606101 - 31606171
Alignment:
| Q |
201 |
agaataagattttgatttatcaaagctaatcaatttgccagagcattcgccatgccctcctataatggttca |
272 |
Q |
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| T |
31606101 |
agaataagattttgatttgtcaaagctaatcaattagccagagcattcaccatg-cctcctaaaatggttca |
31606171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 405
Target Start/End: Original strand, 31606219 - 31606247
Alignment:
| Q |
377 |
gcatacctttgaaaccaactgagaaatac |
405 |
Q |
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| T |
31606219 |
gcatacctttgaaaccaactgagaaatac |
31606247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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