View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_high_8 (Length: 386)
Name: NF10131_high_8
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 6 - 379
Target Start/End: Complemental strand, 33494750 - 33494376
Alignment:
| Q |
6 |
aaaaataactttgaagtcattatttagaatgtaataataataaaataaattatcatgataattattgattatggttcttaatttttgannnnnnnnn-ca |
104 |
Q |
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| T |
33494750 |
aaaaataactttgaagtgattatttagaatgtaataataataaaataaattatcatgataattattgattatggttcttaatttttgattttttttttca |
33494651 |
T |
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| Q |
105 |
ggtgtttaactttgtaaaattagctgagctgtactatgcagcaagccatggcatggacattatgggaccaacaaaaaaccgaagtgctgagaaagtgaga |
204 |
Q |
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| T |
33494650 |
ggtgtttaactttgtaaaattagctgagctgtactatgcagcaagccatggcatggacattatgggaccaacaaaaaaccgaagtgctgagaaagtgaga |
33494551 |
T |
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| Q |
205 |
aaacttttttcactaattaatattgtgttgaaaattttatcttatttttgttctttatgcttagctttgtgatttattactttgtttcagagtaatgtta |
304 |
Q |
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| T |
33494550 |
aaacttttttcactaattaatattgtgttgaaaattttatcttatttttgttctttatgcttagctttgtgatttattactttgtttcagagtaatgtta |
33494451 |
T |
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| Q |
305 |
acaaagctgtgttgttccaacctgcaagtcaatacctaccaatgatagacgaggttcgattttttcttcttctct |
379 |
Q |
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| T |
33494450 |
acaaagctgtgttgttccaacctgcaagtcaatacctaccaatgatagacgaggttcgattttttcttcttctct |
33494376 |
T |
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