View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10131_high_9 (Length: 383)
Name: NF10131_high_9
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 7 - 372
Target Start/End: Complemental strand, 16887975 - 16887610
Alignment:
| Q |
7 |
aacacctgcgagatggggcaacctaatgataccttttgacttttgagtatagaaatcatggattcttaatttttaacatttcaaaaccggatgttttaga |
106 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16887975 |
aacacttgtgagatggggcaacctaatgataccttttgacttttgagtatagaaatcatggattcttaatttttaacatttcaaaaccggaggttttaga |
16887876 |
T |
|
| Q |
107 |
agatagtaatgtattcatgtgcatgaaacttgatatgtgtcggtgacacattgtacaagtaaacggttgcaagaattcactctaccttaacctgctctgt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16887875 |
agatagtaatgtattcatgtgcatgaaacttgatatgtgtcggtgacacattgtacaagtaaacggttgcaagaattcactctaccttaacctgctctgt |
16887776 |
T |
|
| Q |
207 |
gcattggaggtgtgcagcaagtggagttgcgttggacagttcaaaaacgaagactcttcaactacatcgggtttgtctcttgcatattcgctcatactct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16887775 |
gcattggaggtgtgcagcaagtggagttgcgttggacagttcaaaaacgaagactcttcaactacatcgggtttgtctcttgcatattcgctcatactct |
16887676 |
T |
|
| Q |
307 |
cacatgcatacactgacttaatgttgtatgaccattattgtcaattaaaatgaaactgcaatctct |
372 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16887675 |
cacatgcatacactgacttgatgttgtatgaccattattgtcaattaaaatgaaactgcaatctct |
16887610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University