View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_10 (Length: 433)
Name: NF10131_low_10
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 7 - 411
Target Start/End: Complemental strand, 36676673 - 36676269
Alignment:
| Q |
7 |
cagagacaaaaatatagttcccatgcttgggttctccattgaaggaaaggaacaggttttggcatatgcatacatgtcaaatgggaggctttccaaatgg |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676673 |
cagacacaaaaatatagttcccatgcttgggttctccattgaaggaaaggaacaggttttggcatatgcatacatgtcaaatgggaggctttccaaatgg |
36676574 |
T |
|
| Q |
107 |
ttgcatcctttggaaagtgaagtcataagattgaaatggcatgacagggtcaacattgcatttggaatagcaagagggttatcatggctgcatcatacat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676573 |
ttgcatcctttggaaagtgaagtcataagattgaaatggcatgacagggtcaacattgcatttggaatagcaagagggttatcatggctgcatcatacat |
36676474 |
T |
|
| Q |
207 |
gcgatttgggcatagtgcattttagcatatgttcagaatgcatattgctagatgagaactttgaaccaaaaatatccaattttggagaggccaaatttat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676473 |
gcgatttgggcatagtgcattttagcatatgttcagaatgcatattgctagatgagaactttgaaccaaaaatatccaattttggagaggccaaatttat |
36676374 |
T |
|
| Q |
307 |
gaatcccaacattgaagatcatcttggcatgatgtttaaggtgaacgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgaca |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676373 |
gaatcccaacattgaagatcatcttggcatgatgtttaaggtgaacgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgaca |
36676274 |
T |
|
| Q |
407 |
gggaa |
411 |
Q |
| |
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||||| |
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| T |
36676273 |
gggaa |
36676269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 14 - 411
Target Start/End: Complemental strand, 36673911 - 36673514
Alignment:
| Q |
14 |
aaaaatatagttcccatgcttgggttctccattgaaggaaaggaacaggttttggcatatgcatacatgtcaaatgggaggctttccaaatggttgcatc |
113 |
Q |
| |
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||||||||||||||| |||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36673911 |
aaaaatatagttcccctgcttgggttctgcattaaaggaaaggaacaggttttagcatatgcatacatgtcaaatggaaggctttccaaatggttgcatc |
36673812 |
T |
|
| Q |
114 |
ctttggaaagtgaagtcataagattgaaatggcatgacagggtcaacattgcatttggaatagcaagagggttatcatggctgcatcatacatgcgattt |
213 |
Q |
| |
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||| ||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
36673811 |
cttcggaaagtgaagtcataagattgaaatggcatcaaagggtcaacattgcacttggaatagcaagagggttatcatggctgcatcatagctgtgattt |
36673712 |
T |
|
| Q |
214 |
gggcatagtgcattttagcatatgttcagaatgcatattgctagatgagaactttgaaccaaaaatatccaattttggagaggccaaatttatgaatccc |
313 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36673711 |
gggcatagtgcattttaatatatgttcagaatgcatattgctagatgagaattttgaacccaaaatatccaattttggagaggccaaatttatgaatccc |
36673612 |
T |
|
| Q |
314 |
aacattgaagatcatcttggcatgatgtttaaggtgaacgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaa |
411 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36673611 |
aacattgaagatcatcttggcatgatgtttaaggtggacgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaa |
36673514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 14 - 408
Target Start/End: Complemental strand, 36684339 - 36683945
Alignment:
| Q |
14 |
aaaaatatagttcccatgcttgggttctccattgaaggaaaggaacaggttttggcatatgcatacatgtcaaatgggaggctttccaaatggttgcatc |
113 |
Q |
| |
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||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||||| ||||||||||||||| |||||||||||||||||| | | |
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| T |
36684339 |
aaaaatatagttcccatgcttggattctgcattgaaggaaaggaaaggcttttggcatatgaatacatgtcaaatggaaggctttccaaatggttgtacc |
36684240 |
T |
|
| Q |
114 |
ctttggaaagtgaagtcataagattgaaatggcatgacagggtcaacattgcatttggaatagcaagagggttatcatggctgcatcatacatgcgattt |
213 |
Q |
| |
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||||| ||||||||||||| || ||||||||| ||| ||||||||||||||| ||||| |||||||||| ||||||||||| ||||||| || ||||| |
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|
| T |
36684239 |
ctttgaaaagtgaagtcatccgactgaaatggcctgagagggtcaacattgcacttggattagcaagaggattatcatggctccatcatagctgtgattt |
36684140 |
T |
|
| Q |
214 |
gggcatagtgcattttagcatatgttcagaatgcatattgctagatgagaactttgaaccaaaaatatccaattttggagaggccaaatttatgaatccc |
313 |
Q |
| |
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||||||||||||||||| |||| |||| |||||||||||||||||||||| |||||||| ||||||||||||||||| |||| ||||||||||||||| |
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| T |
36684139 |
gggcatagtgcattttaatatatattcacaatgcatattgctagatgagaattttgaacccaaaatatccaattttgggcaggcgaaatttatgaatccc |
36684040 |
T |
|
| Q |
314 |
aacattgaagatcatcttggcatgatgtttaaggtgaacgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagg |
408 |
Q |
| |
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||||||||||||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
36684039 |
aacattgaagatcatctcagcacgatgtttaaagtgaatgacgggaagaaggatgtctacgactttggaagtgtgctttttgaactgattacagg |
36683945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 36695858 - 36695798
Alignment:
| Q |
351 |
acgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaa |
411 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36695858 |
acgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaa |
36695798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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