View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_11 (Length: 432)
Name: NF10131_low_11
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_11 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 5 - 432
Target Start/End: Complemental strand, 38942945 - 38942518
Alignment:
| Q |
5 |
agcagcagagaaagagaaaggcacaacggtcttgcggaaacaatttgcactgccaggcttcaccagaacatggtctcatcttcatcacctgacatctaca |
104 |
Q |
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| T |
38942945 |
agcagaagagaaagagaaaggcacaacggtcttgcggaaacaatttgcactgccaggcttcaccagaacatggtctcatcttcatcacctgacatctaca |
38942846 |
T |
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| Q |
105 |
accctcaagctggtagaatcaaaactatcaccagcttcgacctcccagctctcaggtggctaagactcagtgctgagcatggaactctccacagagtatg |
204 |
Q |
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| T |
38942845 |
accctcaagctggtagaatcaaaactatcaccagcttcgacctcccagctctcaggtggctaagactcagtgctgagcatggaactctccacagagtatg |
38942746 |
T |
|
| Q |
205 |
ttttttgttttaatttgttgtccagattcgcatcaaaattatagaaattgttcaagaattactaactctttatatgaaacagaatgctatgttcgtgcca |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
38942745 |
ttttttgttttaatttgttgtccagattcgcatcaaaattatagaaattgttcaagaattactaacgctttatatgaaacagaatgctatgttcgttcca |
38942646 |
T |
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| Q |
305 |
cactacaatctcaatgcaaacagcataatattggcattgaatggacgtgcaaggctacaagtagtgaactgcaatggcaacactgtgttcgatgaggaac |
404 |
Q |
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| T |
38942645 |
cactacaatctcaatgcaaacagcataatattggcattgaatggacgtgcaaggctacaagtagtgaactgcaatggcaacactgtgttcgatgaggaac |
38942546 |
T |
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| Q |
405 |
tagaagctggtcgtgcattgatcgtgcc |
432 |
Q |
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| T |
38942545 |
tagaagctggccgtgcattgatcgtgcc |
38942518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 28 - 198
Target Start/End: Complemental strand, 38950358 - 38950188
Alignment:
| Q |
28 |
caacggtcttgcggaaacaatttgcactgccaggcttcaccagaacatggtctcatcttcatcacctgacatctacaaccctcaagctggtagaatcaaa |
127 |
Q |
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||||||||||| ||||||||||||||| || || |||| ||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38950358 |
caacggtcttgaggaaacaatttgcaccgctagacttcgccagaacattggctcatcttcatcacctgacatctacaaccctgaagctggtagaatcaaa |
38950259 |
T |
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| Q |
128 |
actatcaccagcttcgacctcccagctctcaggtggctaagactcagtgctgagcatggaactctccacag |
198 |
Q |
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| T |
38950258 |
actgtcaccagctttgacctcccagctctaaggtggctcagactcagtgctgaacatggaactctccacag |
38950188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 283 - 417
Target Start/End: Complemental strand, 38950103 - 38949969
Alignment:
| Q |
283 |
acagaatgctatgttcgtgccacactacaatctcaatgcaaacagcataatattggcattgaatggacgtgcaaggctacaagtagtgaactgcaatggc |
382 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||||||| || ||||||||||||||||||||||| |
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| T |
38950103 |
acagaatgctatgttcgtgccacactacaatctgaatgcaaacagcgcaatatacgcattgaggggacgtgcacggttacaagtagtgaactgcaatggc |
38950004 |
T |
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| Q |
383 |
aacactgtgttcgatgaggaactagaagctggtcg |
417 |
Q |
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| T |
38950003 |
aacactgtgtttgatggcgaacttgaagccggtcg |
38949969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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