View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_12 (Length: 428)
Name: NF10131_low_12
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Original strand, 1200057 - 1200457
Alignment:
| Q |
17 |
gaagcggaatgtgccgtaagaatgccgaaatagcaaatgcaaatgctgttaaagaag---aagaagacattttccacaccaagatccctgaaccagtgat |
113 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
1200057 |
gaagcggaatgtgccttaagaatgccgaaatagcaaatgcaaatgctgttaaagaagcagaagaagacatattccacaccaagatccctgaaccagtgat |
1200156 |
T |
|
| Q |
114 |
aactcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatccaaaacatgggaacaccgttggacttcccttaccaagctctcc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| |
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| T |
1200157 |
aactcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatccaaaacatgggaacaccgttggactttcctcaccaaactctcc |
1200256 |
T |
|
| Q |
214 |
ttacac-----tcgtcaaaatgatttaatcaatgatcaatttgttaggcttcgaagaacacgaaactttgttaggtttgttgatagagccctgattcata |
308 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1200257 |
ttacacgatcatcgtcaaaatgatttaatcaatgatcaacttgttaggcttcgaagaacacgaaactttgttaggtttgttgatagagccctgattcata |
1200356 |
T |
|
| Q |
309 |
ctgatggtataatcctggacagcttt--tcttttcctctttggaaggtatgaaacatcacttctagatgcatggttctctaacatcttcaatcgaagacg |
406 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1200357 |
ctgatggtataatcctggacagcttttctcttttcctctttggaaggtatgaaacatcacttctagatgcatggttctctaacatcttcaatcgaagacg |
1200456 |
T |
|
| Q |
407 |
a |
407 |
Q |
| |
|
| |
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|
| T |
1200457 |
a |
1200457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 1213484 - 1213591
Alignment:
| Q |
112 |
ataactcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatccaaaacatgggaacaccgttggacttcccttaccaagctct |
211 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| |||||||||||| ||||||| || | ||||||||||| |||||||| || ||||| |||| |
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| T |
1213484 |
ataactcacattctctcttttctcccaaccaaagacgctgttcgcacttctatcttatctaagagttgggaacaccgctggacttcactcaccaaactct |
1213583 |
T |
|
| Q |
212 |
ccttacac |
219 |
Q |
| |
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| |||||| |
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| T |
1213584 |
ctttacac |
1213591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 218
Target Start/End: Original strand, 579952 - 580070
Alignment:
| Q |
100 |
cctgaaccagtgataactcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatccaaaacatgggaacaccgttggacttccc |
199 |
Q |
| |
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||||||||||||||||||||||||||| |||| | ||||||||||| || ||||||| || |||||||||||| |||||||| |||||||||||| |
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| T |
579952 |
cctgaaccagtgataactcacattctcagtttcgtaccaaccaaagatgctattcgcacctccatcttatccaaaaaatgggaacgtcgttggacttcca |
580051 |
T |
|
| Q |
200 |
ttaccaagctctccttaca |
218 |
Q |
| |
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| ||||| ||||||||||| |
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| T |
580052 |
tcaccaaactctccttaca |
580070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 112 - 217
Target Start/End: Original strand, 1079027 - 1079132
Alignment:
| Q |
112 |
ataactcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatccaaaacatgggaacaccgttggacttcccttaccaagctct |
211 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||| || |||||||||| ||||||||| ||| |||| ||||||||||||||| ||||||||| |||| |
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| T |
1079027 |
ataactcacatcatctcttttctcccaaccaaagatgccgttcgcacttgtgtcttatctaaacaatggaaacaccgttggactttccttaccaaactct |
1079126 |
T |
|
| Q |
212 |
ccttac |
217 |
Q |
| |
|
|||||| |
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|
| T |
1079127 |
ccttac |
1079132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 112 - 217
Target Start/End: Complemental strand, 5132779 - 5132674
Alignment:
| Q |
112 |
ataactcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatccaaaacatgggaacaccgttggacttcccttaccaagctct |
211 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||| || |||||||||| ||||||||| ||| |||| ||||||||||||||| ||||||||| |||| |
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| T |
5132779 |
ataactcacatcatctcttttctcccaaccaaagatgccgttcgcacttgtgtcttatctaaacaatggaaacaccgttggactttccttaccaaactct |
5132680 |
T |
|
| Q |
212 |
ccttac |
217 |
Q |
| |
|
|||||| |
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|
| T |
5132679 |
ccttac |
5132674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 219
Target Start/End: Complemental strand, 8193444 - 8193298
Alignment:
| Q |
73 |
gaagaagacattttccacaccaagatccctgaaccagtgataactcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatcca |
172 |
Q |
| |
|
||||| ||||| ||| ||| |||| ||||||||| | | |||||||||||||||||||| ||||| || |||| || ||||| ||| | | ||||||| |
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| T |
8193444 |
gaagatgacatattctacaacaagctccctgaacaactaataactcacattctctcttttcttccgacggaagatgctgttcgtgcttttcttttatcca |
8193345 |
T |
|
| Q |
173 |
aaacatgggaacaccgttggacttcccttaccaagctctccttacac |
219 |
Q |
| |
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||| |||| || ||||||| ||||||| || || |||||| ||||| |
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| T |
8193344 |
aaaaatggaaaacccgttggtcttccctcactaaactctccatacac |
8193298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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