View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_14 (Length: 405)
Name: NF10131_low_14
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 60 - 305
Target Start/End: Original strand, 41258090 - 41258349
Alignment:
| Q |
60 |
gtgtttgtagcaatgcattttggatctcagtgtgtttctgatgtagtaggagtctgattcatgaatgaaaacatcttgtttttactca-tttttgttgct |
158 |
Q |
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| T |
41258090 |
gtgtttgtagcaatgcattttggatctcagtgtgtttctgatgtagtaggagtctgattcatgaatgaaaacatcttgtttttactcattttttgttgct |
41258189 |
T |
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| Q |
159 |
taaacaattcatcttatttaatgctactatgattctatgccctcattaattattg-------------ttcgcaattactactggtatacatttcacatt |
245 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
41258190 |
taaacaattcatcttatttaatgctactatcattctatgccctcattaattattgttatgacctttatttcgcaattactactagtatacatttcacatt |
41258289 |
T |
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| Q |
246 |
gattttgattctccaagcaaataatgagaaattgcggttcaattaattcaatttatgcca |
305 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41258290 |
gattttcattctccaagcgaataatgagaaattgcggttcaattaattcaatttatgcca |
41258349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 41258010 - 41258055
Alignment:
| Q |
20 |
aaatctccaaagaaagcttagatttagtttctagggtttggtgttt |
65 |
Q |
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| T |
41258010 |
aaatctccaaagaaagcttagatttagtttctagggtttggtgttt |
41258055 |
T |
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