View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_16 (Length: 395)
Name: NF10131_low_16
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_16 |
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| [»] scaffold0041 (4 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 3 - 271
Target Start/End: Original strand, 89746 - 90014
Alignment:
| Q |
3 |
cattagagatgaaacattcaggtaagtatgaataaaatttagtatctttctactagaaattgatttatgatatatgataataatctatttgtttctcttt |
102 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
89746 |
cattagagatgaaacattcaggtaagaatgaataaaatttagtatctttctactagaaattgatttatgatatatgataataatctatttgtttctcttt |
89845 |
T |
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| Q |
103 |
cagagacttcatcagaaaagctaggaggttgacaattttaatggattccactagcggcgtgacaacgggggatcagcaagnnnnnnnngaaaaccaccag |
202 |
Q |
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| T |
89846 |
cagagacttcatcagaaaagctaggaggttgacaattttaatggattccactagcggcgcgacaacggaggatcagcaagaaaaaaaagaaaaccaccag |
89945 |
T |
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| Q |
203 |
ttcaattgtagagctggatgatcaaattcctctattaccattttgacacattacccttcctatagcaag |
271 |
Q |
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| T |
89946 |
ttcaattgtagagctggatgatcaaattcctctattaccattttgacacattacccttcctatagcaag |
90014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 97592 - 97742
Alignment:
| Q |
9 |
agatgaaacattcaggtaagtatgaataaaatttagtatctttctactagaaattgatttatgatatatgataataatctatttgtttctctttcagaga |
108 |
Q |
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||||||||||||| |||| | |||||||||||| || ||||||||||||||||||||| |||||||| || || |||| |||||| | |||||||||||| |
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| T |
97592 |
agatgaaacattctggtatgaatgaataaaattgagaatctttctactagaaattgatatatgatatgtgttattaatatatttgatgctctttcagaga |
97691 |
T |
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| Q |
109 |
cttcatcagaaaagctaggaggttgacaattttaatggattccactagcgg |
159 |
Q |
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| T |
97692 |
cttcatctgaaaggctaggaggttgacaattttaatagagtccactagcgg |
97742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 97787 - 97865
Alignment:
| Q |
192 |
aaaaccaccagttcaattgtagagctggatgatcaaattcctctattaccattttgacacattacccttcctatagcaag |
271 |
Q |
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| T |
97787 |
aaaaccaccagttaaact-tagagctgaatgatcaaattactctattaccaatttgacacattacccttcctgtagcaag |
97865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 378
Target Start/End: Original strand, 90075 - 90121
Alignment:
| Q |
332 |
ttgggaatagatgtgagggagagaaggaatactagagagtagagact |
378 |
Q |
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| T |
90075 |
ttgggaatagatgtgagggagagaaggaatactagagagtagagact |
90121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 3 - 271
Target Start/End: Complemental strand, 40876537 - 40876269
Alignment:
| Q |
3 |
cattagagatgaaacattcaggtaagtatgaataaaatttagtatctttctactagaaattgatttatgatatatgataataatctatttgtttctcttt |
102 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40876537 |
cattagagatgaaacattcaggtaagaatgaataaaatttagtatctttctactagaaattgatttatgatatatgataataatctatttgtttctcttt |
40876438 |
T |
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| Q |
103 |
cagagacttcatcagaaaagctaggaggttgacaattttaatggattccactagcggcgtgacaacgggggatcagcaagnnnnnnnngaaaaccaccag |
202 |
Q |
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| T |
40876437 |
cagagacttcatcagaaaagctaggaggttgacaattttaatggattccactagcggcgcgacaacggaggatcagcaagaaaaaaaagaaaaccaccag |
40876338 |
T |
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| Q |
203 |
ttcaattgtagagctggatgatcaaattcctctattaccattttgacacattacccttcctatagcaag |
271 |
Q |
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| T |
40876337 |
ttcaattgtagagctggatgatcaaattcctctattaccattttgacacattacccttcctatagcaag |
40876269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 40868690 - 40868540
Alignment:
| Q |
9 |
agatgaaacattcaggtaagtatgaataaaatttagtatctttctactagaaattgatttatgatatatgataataatctatttgtttctctttcagaga |
108 |
Q |
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||||||||||||| |||| | |||||||||||| || ||||||||||||||||||||| |||||||| || || |||| |||||| | |||||||||||| |
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| T |
40868690 |
agatgaaacattctggtatgaatgaataaaattgagaatctttctactagaaattgatatatgatatgtgttattaatatatttgatgctctttcagaga |
40868591 |
T |
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| Q |
109 |
cttcatcagaaaagctaggaggttgacaattttaatggattccactagcgg |
159 |
Q |
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| T |
40868590 |
cttcatctgaaaggctaggaggttgacaattttaatagagtccactagcgg |
40868540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 40868495 - 40868417
Alignment:
| Q |
192 |
aaaaccaccagttcaattgtagagctggatgatcaaattcctctattaccattttgacacattacccttcctatagcaag |
271 |
Q |
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||||||||||||| || | |||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||| |
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| T |
40868495 |
aaaaccaccagttaaact-tagagctgaatgatcaaattactctattaccaatttgacacattacccttcctgtagcaag |
40868417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 40876208 - 40876162
Alignment:
| Q |
332 |
ttgggaatagatgtgagggagagaaggaatactagagagtagagact |
378 |
Q |
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| T |
40876208 |
ttgggaatagatgtgagggagagaaggaatactagagagtagagact |
40876162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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