View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_17 (Length: 388)
Name: NF10131_low_17
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 39833245 - 39833016
Alignment:
| Q |
1 |
gttcgtatgatatattccaagctagaaaagctaccaagtaactaagggtaataaagcactgtggcatccattacactaaaaattgtnnnnnnn-ctgaat |
99 |
Q |
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| T |
39833245 |
gttcgtatgatatattccaagctagaaaagctaccaagtaactaagggtaataaagcactgtggcatccattacactaaaaattgtaaaaaaaactgaaa |
39833146 |
T |
|
| Q |
100 |
aagaaaccaagtttgtaaagaagtttatgagatatcaatgacctgaaattcagaaagctttccttcatccaacaatttgaaaagggcaaaacctgctggt |
199 |
Q |
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| T |
39833145 |
atgaaaccaagtttgtaaagaagtttatgagatattaatgacctgaaattcagaaagctttccttcatccaacaatttgaaaagggcaaaacctgctggt |
39833046 |
T |
|
| Q |
200 |
gtttcaaataatacaagcatcttatcactt |
229 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
39833045 |
gtttcaaataatacaagcatcttatcactt |
39833016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 228 - 385
Target Start/End: Complemental strand, 39831169 - 39831012
Alignment:
| Q |
228 |
ttcattctctctgcaatcttgttaccaagttcctcaatgggctcagcaaatcttaatgcattaaaagctacctgaaaatttagatgacaattttaacaaa |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39831169 |
ttcattctctctgcaatcttgttaccaagttcctcaatgggctcagcaaatcttaatgcattaaaagctacctgaaaatttagatgacaattttcacaaa |
39831070 |
T |
|
| Q |
328 |
ctgcaattacttgtcgtataaataaatttcttagtccttctaagtactccctttgctt |
385 |
Q |
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|
| T |
39831069 |
ctgcaattacttgtcatataaataaatttcttagtccttctaagtactctcttggctt |
39831012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 228 - 373
Target Start/End: Complemental strand, 8179159 - 8179014
Alignment:
| Q |
228 |
ttcattctctctgcaatcttgttaccaagttcctcaatgggctcagcaaatcttaatgcattaaaagctacctgaaaatttagatgacaattttaacaaa |
327 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||| |
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| T |
8179159 |
ttcattctatctgcgatcttgttaccaagttcctcaattggctcagcaaatcttaatgcattaaaagcaacctgaaaatttagatgacaacgttcacaat |
8179060 |
T |
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| Q |
328 |
ctgcaattacttgtcgtataaataaatttcttagtccttctaagta |
373 |
Q |
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|
| T |
8179059 |
ctgcaattacttgtcgtataaataaacttcttagtctttttaagta |
8179014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 2709255 - 2709360
Alignment:
| Q |
123 |
tttatgagatatcaatgacctgaaattcagaaagctttccttcatccaacaatttgaaaagggcaaaacctgctggtgtttcaaataatacaagcatctt |
222 |
Q |
| |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
2709255 |
tttatgagatattaatgacctgaaattgagaaagctttccttcatccaacaatttgaaaagggcaaaacctgctggagtttcaaataatac-agcatctt |
2709353 |
T |
|
| Q |
223 |
atcactt |
229 |
Q |
| |
|
||||||| |
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|
| T |
2709354 |
atcactt |
2709360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 2703890 - 2703979
Alignment:
| Q |
140 |
acctgaaattcagaaagctttccttcatccaacaatttgaaaagggcaaaacctgctggtgtttcaaataatacaagcatcttatcactt |
229 |
Q |
| |
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||||||| |||||||||||||||||| | | || |||||||||||| ||||| || || |||||||| | ||| | ||| ||||||||| |
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| T |
2703890 |
acctgaacttcagaaagctttccttcgttgagcactttgaaaagggcgaaacccgcaggggtttcaaacagtaccaacattttatcactt |
2703979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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