View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_2 (Length: 768)
Name: NF10131_low_2
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 451 - 737
Target Start/End: Complemental strand, 24529468 - 24529183
Alignment:
| Q |
451 |
tctatgatatttatcacttcgtttagaaaaaattgaaagcatttttcattttaataaggaatttcatctgctcttatgtgtgtcattttatattttgcac |
550 |
Q |
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| T |
24529468 |
tctataatatttatcacttcgtttagaaaaaattgaaagcatttttcattttaataaggaatttcatctgctcttatgtgtgtcattttatattttgcac |
24529369 |
T |
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| Q |
551 |
tatttttgtttgttgaacatttcgatatcctagagttttgccatatatatagtatctccctaggaatatcaagtaaagtaatttagaaactccaaagcat |
650 |
Q |
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| T |
24529368 |
tatttttgtttgttgaacatttcgatatcctagagttttgccatatataaagtatctccctaggaatatcaagtaaagtaatctagaaactccaaagcat |
24529269 |
T |
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| Q |
651 |
taactgcattatcatatttatgtatgaccgaaattgaaagcctttgccggtaagacccacctcaaggaaatgctgataatgataggt |
737 |
Q |
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| T |
24529268 |
taactgtattatcatattta-gtatgagcgaaattgaaagcctttgccggtaagacccacctcaaggaaatgctgataatgataggt |
24529183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 24529941 - 24529690
Alignment:
| Q |
1 |
gatagttggagacaaggagctgcaccaaaattatatagatgactttgttgattatgtggagctacatattcttacctctaagcattagcactaattaggt |
100 |
Q |
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| T |
24529941 |
gatagttggagacaaggagctgcaccaaaaatatatagatgactttgttgattatgtggagctacatattcttacctctaagcattagcactaattaggt |
24529842 |
T |
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| Q |
101 |
ctttatttcatcttgtgttttcatattatctatggtttagagtgatttaatgcaataatcttcaaagtcccttggaatttcgatgttcatttgcta-ttt |
199 |
Q |
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| T |
24529841 |
ctttatttcatcttgtgttttcatattatctatggtttagagtgatttaatgcaataatcttcaaagtccattggaatttcgatgttcatttgctatttt |
24529742 |
T |
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| Q |
200 |
ctttttgctatcatctaggatagactcaaagcattagcacaaaggttgtttt |
251 |
Q |
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| T |
24529741 |
atttttgctatcatctaggatagactcaaagtattagcacaaaggttttttt |
24529690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 232 - 406
Target Start/End: Complemental strand, 24529668 - 24529494
Alignment:
| Q |
232 |
attagcacaaaggttgttttgttgtcattgatgtaatgtcatcctcgacagattttatagtaatttttgtgttggtctttttatgtgatgcattattaaa |
331 |
Q |
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| T |
24529668 |
attagcacaaaggttgttttgttgtcattgatgtaatgtcatcctcgacagattttatagtaatttttgtgttggtctttttatgtgatgcattattaaa |
24529569 |
T |
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| Q |
332 |
atagaaattgatgtttgttactttgctccatgagttgatttggttgtgtttgaaacaagtattatattgataggt |
406 |
Q |
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| T |
24529568 |
atagaaattgatgtttgttactttgctccatgacttgatttggttgtgtttgaaacaagtattgtattgataggt |
24529494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 511 - 711
Target Start/End: Complemental strand, 24527406 - 24527210
Alignment:
| Q |
511 |
atttcatctgctcttatgtgtgtcattttatattttgcactatttttgtttgttgaacatttcgatatcctagagttttgccatatatatagtatctccc |
610 |
Q |
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| T |
24527406 |
atttgatctcctcttatgtgtgtgattttatattttgca-tattttcatttggtgaacatttcgatatcctagagttttgtcatatata--gtatatgcc |
24527310 |
T |
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| Q |
611 |
taggaatatcaagtaaagtaatttagaaactccaaagcattaactgcattatcatatttatgtatgaccgaaattgaaagcctttgccggtaagacccac |
710 |
Q |
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| T |
24527309 |
ttagaatatcaagtaaactagtctagaaactccaa-gcagtaattgtattatcatatttatgtatgagcgaaattgaaagcatttgcctgtaagacccac |
24527211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 410 - 499
Target Start/End: Complemental strand, 24528292 - 24528203
Alignment:
| Q |
410 |
cttgattcaaatctatagtctcatagttgtgtcggtgaaattctatgatatttatcacttcgtttagaaaaaattgaaagcatttttcat |
499 |
Q |
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| T |
24528292 |
cttgattcaaatatatagtctcacagttgtgtcattgagtttttgtggtatttatcacttcgtttagaaaaaattaaaagcatttttcat |
24528203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 24543942 - 24544033
Alignment:
| Q |
1 |
gatagttggagacaaggagctgcaccaaaattatatagatgactttgttgattatgtggagctacatattcttacctctaagcattagcact |
92 |
Q |
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| T |
24543942 |
gatatttggagacaaggagctgcaccaaaagtatttggatgactttgttgattatatggagctccatatctctgccactaagcattagcact |
24544033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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