View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_20 (Length: 369)
Name: NF10131_low_20
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 13232130 - 13231786
Alignment:
| Q |
18 |
tatatagttagtggcagatattagtacatggagagatcataattttgaaggtcgnnnnnnnncact----gatatttgaataattacaaacattgaacac |
113 |
Q |
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| T |
13232130 |
tatatagttagtgaca--tattagtacatggagagatcataattttgaaggttgaaaaaaaacacttactgatatttgaataattacaaacattaaacac |
13232033 |
T |
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| Q |
114 |
gacgctgacacatcaacaatatgaataatttgacaaaatagattaaataaatgtaaccacatgtgtcaatgtcatgtcagcatccaacacagacacgtgt |
213 |
Q |
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| T |
13232032 |
gacgctgacacatcaacaatatgaataatttgacaaaatagattaaataaatgtaaccacatgtgtcaatgtcgtgtcagcatccaacacagacacgtgg |
13231933 |
T |
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| Q |
214 |
tagccactagacacgacttcaatctaaggtgtcttgtctatatagttagtgacagatattagtacatggaggagataattttgaaggttgaaataaaaac |
313 |
Q |
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| T |
13231932 |
tagccactagacacgacttcaatctaaggtgtcttgtctatatagttagtgacagatattagtacatggaggagataattttgaaggttgaaataaaaac |
13231833 |
T |
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| Q |
314 |
cacttactgataagccaagctgctcaataagcttctcaactctctgc |
360 |
Q |
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| T |
13231832 |
cacttactgataagccaagctgctcaataagcttctcaactctctgc |
13231786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 110 - 325
Target Start/End: Complemental strand, 13232272 - 13232059
Alignment:
| Q |
110 |
acacgacgctgacacatcaacaatatgaataatttgacaaaatagattaaataaatgtaaccacatgtgtcaatgtcatgtcagcatccaacacagacac |
209 |
Q |
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| T |
13232272 |
acacgacactaacacgtcgacattatgaataatttgacaaaatagaataactaaatataaccacgtgtatcagtgtcgtgtccgcatccaacatagacac |
13232173 |
T |
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| Q |
210 |
gtgttagccactagacacgacttcaatctaaggtgtcttgtctatatagttagtgacagatattagtacatggag-ga-gataattttgaaggttgaaat |
307 |
Q |
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| T |
13232172 |
gtgttagacactagacacgacttcaatctaagatgtcttgtgtatatagttagtgac--atattagtacatggagagatcataattttgaaggttgaa-- |
13232077 |
T |
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| Q |
308 |
aaaaaccacttactgata |
325 |
Q |
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| T |
13232076 |
aaaaaacacttactgata |
13232059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 28369855 - 28369799
Alignment:
| Q |
137 |
aataatttgacaaaatagattaaataaatgtaaccacatgtgtcaatgtcatgtcag |
193 |
Q |
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| T |
28369855 |
aataatttgagaaaatgaattaaataaatgtaataacatgtgtcagtgtcatgtcag |
28369799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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