View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_21 (Length: 364)
Name: NF10131_low_21
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 348
Target Start/End: Original strand, 38169769 - 38170109
Alignment:
| Q |
11 |
cataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgacta |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38169769 |
cataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgacta |
38169868 |
T |
|
| Q |
111 |
caccattttattatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaa---cttcttctttttgttgttgtaattttt |
207 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38169869 |
caccattttactatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaacttcttcttctttttgttgttgtaattttt |
38169968 |
T |
|
| Q |
208 |
tatctctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38169969 |
tatctctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatga |
38170068 |
T |
|
| Q |
308 |
aacataaacaacagacttttcatcctttgaatccaaccatt |
348 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
38170069 |
aacataaacaacagacttttcatcctttgaatccaaccatt |
38170109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 348
Target Start/End: Original strand, 38184252 - 38184592
Alignment:
| Q |
11 |
cataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgacta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184252 |
cataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgacta |
38184351 |
T |
|
| Q |
111 |
caccattttattatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaacttcttctttttgttgttg--taa-ttttt |
207 |
Q |
| |
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|||||||| | |||||||||||| | ||| |||||||||||||||||||||| | ||||||| |||| | || |||| || |||||| ||| ||||| |
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| T |
38184352 |
caccatttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcactatcaccctcctcttctttttgttgcataacttttt |
38184451 |
T |
|
| Q |
208 |
tatctctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatga |
307 |
Q |
| |
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||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||| |||||||||||||||||| |
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| T |
38184452 |
catctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatga |
38184551 |
T |
|
| Q |
308 |
aacataaacaacagacttttcatcctttgaatccaaccatt |
348 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||| |
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| T |
38184552 |
aacataaaccacagacgattcatcctttgaatccaaccatt |
38184592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 348
Target Start/End: Original strand, 38179583 - 38179923
Alignment:
| Q |
11 |
cataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgacta |
110 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38179583 |
cataggaacccctgaacctaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacctaaagaacggtgcgacaaaacctccacctgacta |
38179682 |
T |
|
| Q |
111 |
caccattttattatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaacttcttctttttgttgttg--taa-ttttt |
207 |
Q |
| |
|
|||||||| | |||||||||||| | ||| ||||||| |||||||||||||| | ||||||| |||| | || |||| || |||||| ||| ||||| |
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|
| T |
38179683 |
caccatttcactatcttcccattaacattcctctcaagctcctctctacaacttaactcatcactatcaccctcctcttctttttgttgcataacttttt |
38179782 |
T |
|
| Q |
208 |
tatctctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatga |
307 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||| |||||||||||||||||| |
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| T |
38179783 |
catctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctattggacaaaatagcaagagtaccaaatga |
38179882 |
T |
|
| Q |
308 |
aacataaacaacagacttttcatcctttgaatccaaccatt |
348 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||| |
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| T |
38179883 |
aacataaaccacagacgattcatcctttgaatccaaccatt |
38179923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 322
Target Start/End: Complemental strand, 35053994 - 35053885
Alignment:
| Q |
213 |
ctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaacat |
312 |
Q |
| |
|
|||| |||||||||||| | ||||||| |||||||||| ||| |||||||||||||| ||||||| | |||||||||| | ||||||||||||||| |
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| T |
35053994 |
ctaagaacccacaagaatggaaatccacaatccaacaaagcatgtgcaatttcctccctttgtctctcagacaaaacaaagtaactaccaaatgaaacat |
35053895 |
T |
|
| Q |
313 |
aaacaacaga |
322 |
Q |
| |
|
|||| ||||| |
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|
| T |
35053894 |
aaaccacaga |
35053885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 35060909 - 35060845
Alignment:
| Q |
15 |
ggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaa |
79 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||||| |||||||| |||| |||||||||||| |
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| T |
35060909 |
ggaaccccagataccaaactttccaaagtcgagttccaaccacaatgagtcaaaaaacaacccaa |
35060845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 319
Target Start/End: Complemental strand, 35060750 - 35060641
Alignment:
| Q |
210 |
tctctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaa |
309 |
Q |
| |
|
||||| || ||||||||||| ||||| ||| ||| |||||| |||| |||||||||||| |||||| | |||||||||| | ||||||| |||| |
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|
| T |
35060750 |
tctctcatgacccacaagaatgaaaacccacaattcaacaacgcacttgcaatttcctctgtttgtcgctcagacaaaacaaagtaactaccaaaagaaa |
35060651 |
T |
|
| Q |
310 |
cataaacaac |
319 |
Q |
| |
|
|||||||||| |
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|
| T |
35060650 |
cataaacaac |
35060641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 35054175 - 35054107
Alignment:
| Q |
11 |
cataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaa |
79 |
Q |
| |
|
||||||||||||| |||| ||||||||||| |||||||| ||||| || |||| |||||||||||| |
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|
| T |
35054175 |
cataggaaccccttttaccaagctttccaaagttgaattccaaccacagtgtgtcaaaaaacaacccaa |
35054107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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