View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_23 (Length: 357)
Name: NF10131_low_23
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 350
Target Start/End: Complemental strand, 7779277 - 7778941
Alignment:
| Q |
14 |
actactactcccttgcttcttggtcttcaaatgatcgcgtgaaatctgaaaaaccttatccggagtctgagaagggggagacttggaaggagttaaagga |
113 |
Q |
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| T |
7779277 |
actactactcccttgcttcttggtcttcaaatgatcgcgtgaaatctgaaaaaccttatccggagtctgagaagggggagacttggaaggagttacagga |
7779178 |
T |
|
| Q |
114 |
ttgaaatcgtcattctctgtgaaatcataaacttctaaactgcgtttgttgctatcagaagcaacattcttagcatatgaacttccaccaagctttgaaa |
213 |
Q |
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| T |
7779177 |
ttgaaatcgtcgttctctgtgaaatcataaacttctaaactgcgtttgttgctatcagaagcaacattcttagcatatgaacttccaccaagctttgaaa |
7779078 |
T |
|
| Q |
214 |
tataagccaagctggtagactcccaatgccgcactcggattttctgatttgatgacccgaaaggaaattgttcacgacgaggaaaagtatcaggaaactt |
313 |
Q |
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| T |
7779077 |
tataagccaagctggtagactcccaatgccgcactcggattttctgatttgatgacccgaaaggaaattgttcacgacgaggaaaagtatcaggaaactt |
7778978 |
T |
|
| Q |
314 |
gcggctttgtggagaagaatactcaaacttcatctca |
350 |
Q |
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| T |
7778977 |
gcggctttgtggagaagaatactcaaacttcttctca |
7778941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 7774468 - 7774121
Alignment:
| Q |
18 |
ctactcccttgcttcttggtcttcaaatgatcgcgtgaaatctgaaaaaccttatccggagtctgagaagggggagacttggaaggagttaaaggattga |
117 |
Q |
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| T |
7774468 |
ctactccgttgcttctctgtcttcgtatgatcgcgtgaaatctggaacctcttatccggagtttgagaaggaggagagttggaagtagttaaaggattga |
7774369 |
T |
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| Q |
118 |
aatcgtcattctctgtgaaatcataaacttctaaactgcgtttgttgctatcagaagcaacattcttagcatatgaacttccaccaagctttgaaatata |
217 |
Q |
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|||| || ||||||||||||||||||| ||| ||||||||||||| | |||||||||||||||||||||||| ||||||| || | |||||| |||||| |
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| T |
7774368 |
aatcatccttctctgtgaaatcataaatttccgaactgcgtttgtttccatcagaagcaacattcttagcatacgaacttctacaacgctttgcaatata |
7774269 |
T |
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| Q |
218 |
agccaagctggtagactcccaatgccgcactcggattttct---------------gatttgatgacccgaaaggaaattgttcacgacgaggaaaagta |
302 |
Q |
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| T |
7774268 |
ggctaagctggtagaattccaatgctgcactcggattttctgattaggagttttccgattagatggccggacaggaaattgttcacggcgaggaaatata |
7774169 |
T |
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| Q |
303 |
tcaggaaacttgcggctttgtggagaagaatactcaaacttcatctca |
350 |
Q |
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| T |
7774168 |
tcaagaaacttgcggctttgtggacaagaataatcaaacttcttctca |
7774121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 85 - 350
Target Start/End: Complemental strand, 7768224 - 7767944
Alignment:
| Q |
85 |
aagggggagacttggaaggagttaaaggattgaaatcgtcattctctgtgaaatcataaacttctaaactgcgtttgttgctatcagaagcaacattctt |
184 |
Q |
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|||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| ||||||| |||||||||||| |
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| T |
7768224 |
aaggaggagagttggaaggagttaaaggattgaaatcatcattctctgtgaaatcataaacttccaaactgcgttcgtttctatcaggagcaacattctt |
7768125 |
T |
|
| Q |
185 |
agcatatgaacttccaccaagctttgaaatataagccaagctggtagactcccaatgccgcactcgga---------------ttttctgatttgatgac |
269 |
Q |
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| T |
7768124 |
aacatatgaacttccactaagctttgcaatagaagccaaattggtagaattccaatgctgcacgcggactttctgattaagagttttctgatttgatgac |
7768025 |
T |
|
| Q |
270 |
ccgaaaggaaattgttcacgacgaggaaaagtatcaggaaacttgcggctttgtggagaagaatactcaaacttcatctca |
350 |
Q |
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|| ||||||| |||||| ||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
7768024 |
ccaaaaggaagttgttcgcgatgaggaaaagtatcaataaacttgcggctttgtggacaagaatactcaaacttcctctca |
7767944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 7768270 - 7768227
Alignment:
| Q |
18 |
ctactcccttgcttcttggtcttcaaatgatcgcgtgaaatctg |
61 |
Q |
| |
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| T |
7768270 |
ctactcctttgcttctctgtcttcaaatgatcgcgtgaaatctg |
7768227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 75 - 210
Target Start/End: Original strand, 12752474 - 12752609
Alignment:
| Q |
75 |
ggagtctgagaagggggagacttggaaggagttaaaggattgaaatcgtcattctctgtgaaatcataaacttctaaactgcgtttgttgctatcagaag |
174 |
Q |
| |
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|||||||||||||||||||| |||| ||||||||| | ||||||| | ||||||||| | ||||||| | |||| | ||||| |||| | |||||| || |
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| T |
12752474 |
ggagtctgagaagggggagagttgggaggagttaaggcattgaaaacatcattctctataaaatcattagcttccagactgcatttgcttttatcaggag |
12752573 |
T |
|
| Q |
175 |
caacattcttagcatatgaacttccaccaagctttg |
210 |
Q |
| |
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||||||||| |||||||||||| |||||| |||||| |
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| T |
12752574 |
caacattctcagcatatgaactcccaccaggctttg |
12752609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 75 - 210
Target Start/End: Original strand, 12815434 - 12815569
Alignment:
| Q |
75 |
ggagtctgagaagggggagacttggaaggagttaaaggattgaaatcgtcattctctgtgaaatcataaacttctaaactgcgtttgttgctatcagaag |
174 |
Q |
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| T |
12815434 |
ggagtctgagaagggggagagttgggaggagttaaggcattgaaaacatcattctctataaaatcattagcttccagactgcatttgcttttatcaggag |
12815533 |
T |
|
| Q |
175 |
caacattcttagcatatgaacttccaccaagctttg |
210 |
Q |
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| T |
12815534 |
caacattctcagcatatgaactcccaccaggctttg |
12815569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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