View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10131_low_25 (Length: 350)
Name: NF10131_low_25
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 29157661 - 29158001
Alignment:
| Q |
1 |
gtctatggaaagcctattcttcttagttgacgttgtcctgatggattggccagatgcatattagtagtggttttcataatgagtctatgtctaatttact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
29157661 |
gtctatggaaagcctattcttcttagttgacgttgtcttgatggattggccagatgcatattagtagtggttttcgtaatgggtctatgtctaatttact |
29157760 |
T |
|
| Q |
101 |
actcccgtagaggctgttagtttaattctttggtaaagcagtgtggcaaaaagataaatgtttcaaatcttcgattcttcaatggatgtctagtcatctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29157761 |
actcccgtagaggctgttagtttaattctttggtaaagcagtgtggcaaaaagataaatgtttcaaatcttcgattcttcaatggatgtctagtcatctt |
29157860 |
T |
|
| Q |
201 |
gcttgtttagccattggtggattatttgatttagtctatgcagtggtagttttatatgattttgttcatctacatgttggaaaaacattatacttatgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29157861 |
gcttgtttagccattggtggattatttgatttagtctatgtagtggtagttttatatgattttgttcatctacatgttggaaaaacattatacttatgtt |
29157960 |
T |
|
| Q |
301 |
aagtatacctttgagtcgatctgttcttagtttgttcatct |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29157961 |
aagtatacctttgagtcgatctgttcttagtttgttcatct |
29158001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 88 - 240
Target Start/End: Complemental strand, 28624907 - 28624755
Alignment:
| Q |
88 |
tgtctaatttactactcccgtagaggctgttagtttaattctttggtaaagcagtgtggcaaaaagataaatgtttcaaatcttcgattcttcaatggat |
187 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| || |||| ||||||||| |
|
|
| T |
28624907 |
tgtctaatttactactcccgtacaggctgttagtttaattctttggtaaagcagtgtgggaaaaagaaaaatgtttcaaatatttgattgctcaatggat |
28624808 |
T |
|
| Q |
188 |
gtctagtcatcttgcttgtttagccattggtggattatttgatttagtctatg |
240 |
Q |
| |
|
||||| ||||||||||||||| |||| ||||||| ||||||||| |||||| |
|
|
| T |
28624807 |
gtctaatcatcttgcttgtttcagcatttgtggattctttgatttaatctatg |
28624755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 11982217 - 11982143
Alignment:
| Q |
178 |
ttcaatggatgtctagtcatcttgcttgtttagccattggtggattatttgatttagtctatgcagtggtagttt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11982217 |
ttcaatggatgtctagtcatcttgcttgtttagccattggtggattatttgatttagtttatgcagtggtagttt |
11982143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 18770394 - 18770468
Alignment:
| Q |
178 |
ttcaatggatgtctagtcatcttgcttgtttagccattggtggattatttgatttagtctatgcagtggtagttt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18770394 |
ttcaatggatgtctagtcatcttgcttgtttagccattggtggattatttgatttagtttatgcagtggtagttt |
18770468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 11981474 - 11981432
Alignment:
| Q |
251 |
tttatatgattttgttcatctacatgttggaaaaacattatac |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11981474 |
tttatatgattttgttcatctacatgttggaaaaacgttatac |
11981432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 293
Target Start/End: Original strand, 18771137 - 18771179
Alignment:
| Q |
251 |
tttatatgattttgttcatctacatgttggaaaaacattatac |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18771137 |
tttatatgattttgttcatctacatgttggaaaaacgttatac |
18771179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 341
Target Start/End: Complemental strand, 11981436 - 11981399
Alignment:
| Q |
304 |
tatacctttgagtcgatctgttcttagtttgttcatct |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11981436 |
tatacctttgagtcgatctgttcttagtttgttcatct |
11981399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 18771175 - 18771212
Alignment:
| Q |
304 |
tatacctttgagtcgatctgttcttagtttgttcatct |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18771175 |
tatacctttgagtcgatctgttcttagtttgttcatct |
18771212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University