View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10131_low_3 (Length: 681)

Name: NF10131_low_3
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10131_low_3
NF10131_low_3
[»] chr1 (6 HSPs)
chr1 (278-662)||(48471475-48471862)
chr1 (42-286)||(48472166-48472411)
chr1 (115-287)||(35687416-35687588)
chr1 (317-426)||(3621976-3622082)
chr1 (317-371)||(48470943-48470997)
chr1 (317-371)||(3622591-3622644)
[»] chr3 (6 HSPs)
chr3 (317-662)||(53145143-53145475)
chr3 (317-426)||(37104407-37104513)
chr3 (317-371)||(21811934-21811988)
chr3 (317-371)||(37105016-37105070)
chr3 (317-371)||(53144621-53144675)
chr3 (357-473)||(21812434-21812553)
[»] chr4 (5 HSPs)
chr4 (317-662)||(55010898-55011232)
chr4 (317-426)||(37275700-37275806)
chr4 (317-371)||(37275143-37275197)
chr4 (317-371)||(55011687-55011741)
chr4 (323-378)||(198944-198999)
[»] chr5 (5 HSPs)
chr5 (317-613)||(31111102-31111395)
chr5 (317-371)||(2458293-2458347)
chr5 (317-426)||(2457698-2457804)
chr5 (317-371)||(31110541-31110595)
chr5 (628-662)||(31111081-31111115)
[»] chr7 (1 HSPs)
chr7 (534-663)||(39318018-39318146)
[»] chr8 (3 HSPs)
chr8 (115-287)||(44972017-44972192)
chr8 (317-361)||(32666698-32666742)
chr8 (430-471)||(32666804-32666845)
[»] chr6 (1 HSPs)
chr6 (115-287)||(7724120-7724292)
[»] chr2 (1 HSPs)
chr2 (317-390)||(2650284-2650357)


Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 278 - 662
Target Start/End: Complemental strand, 48471862 - 48471475
Alignment:
Q  278 atttatttttggtggcattttacatggaaaagnnnnnnnaaaccactagattgaaagggaacattaatcttactataaactgtccacactatatctttct 377  Q
    ||||||||||||||||||||||||||| ||||       |||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  48471862 atttatttttggtggcattttacatgggaaagtttttttaaaccactggattgaaagggaacattaatcttactgtaaattgtccacactatatctttct 48471763  T
Q  378 ttttattgtcttcttcaacctttcatgaagcaccaatagacccaccaccgattccaagagccacccctaaaccattgatttcaccctaaatcttttctac 477  Q
    |||||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  48471762 ttttattgtcttc---aacctctcatgaagcaccaatagacccaccaccgattccaagagccacccctaaaccattgatttcagcctaaatcttttctag 48471666  T
Q  478 tcatcatcttcatcttcatcctcttcccaatcccccaccg------gnnnnnnnnncaatttcattatcttctcaaatccaaaagttatagagcatatat 571  Q
    ||| ||||||||| ||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||| |||||||||||    
T  48471665 tcaccatcttcatattcatcctcttcccaatcccccaccgaaaaaaaaaaaaaaaacaatttcattatcttctcaaatccaaaagttacagagcatatat 48471566  T
Q  572 cttggctattgtccctaaatcaaatgacctctaacccattttctaaatccatttatctttaacccatttttcctgattccaacaagcttca 662  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48471565 cttggctattgtccctaaatcaaatgacctctaacccattttctaaatccatttatctttaacccatttttcctgattccaacaagcttca 48471475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 42 - 286
Target Start/End: Complemental strand, 48472411 - 48472166
Alignment:
Q  42 cataggagattgatccaaaaataacttcatctaacagtcataacgaaacnnnnnnn-ctacagaacaacaaccttcatccgcaattcgagcaagtgaaat 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  48472411 cataggagattgatccaaaaataacttcatctaacagtcataacgaaacaaaaaaaactacagaacaacaaccttcatccgcaattcgagcaagtgaaat 48472312  T
Q  141 attgacattagcattttgatgtatcaaattacttggaatgtaattaaatttaggaagatcctcacttccagtttcatcaaataatgagatttcaacattt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48472311 attgacattagcattttgatgtatcaaattacttggaatgtaattaaatttaggaagatcctcacttccagtttcatcaaataatgagatttcaacattt 48472212  T
Q  241 tatgaaccttttgttatgtcattgacatatcgaaaggatttatttt 286  Q
    |||||||||||||||||||| ||  |||||||||||||||||||||    
T  48472211 tatgaaccttttgttatgtcgttatcatatcgaaaggatttatttt 48472166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 115 - 287
Target Start/End: Original strand, 35687416 - 35687588
Alignment:
Q  115 tcatccgcaattcgagcaagtgaaatattgacattagcattttgatgtatcaaattacttggaatgtaattaaatttaggaagatcctcacttccagttt 214  Q
    ||||||||||| ||||||||||||||||| ||||| ||| ||||||  |     |||| |||||||||||||||||| |||| |||||||||    ||||    
T  35687416 tcatccgcaatccgagcaagtgaaatattaacatttgcactttgatacagtgtgttacatggaatgtaattaaattttggaaaatcctcactgttggttt 35687515  T
Q  215 catcaaataatgagatttcaacattttatgaaccttttgttatgtcattgacatatcgaaaggatttattttt 287  Q
    |||| |||||||| |||| ||  ||||  ||||||||||| ||||| | |||||||||||||||||| |||||    
T  35687516 catctaataatgatattttaatgttttcagaaccttttgtaatgtcttcgacatatcgaaaggatttcttttt 35687588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 317 - 426
Target Start/End: Original strand, 3621976 - 3622082
Alignment:
Q  317 aaaccactagattgaaagggaacattaatcttactataaactgtccacactatatctttctttttattgtcttcttcaacctttcatgaagcaccaatag 416  Q
    |||||| |||||| |||||||||||| || |||  |||  ||||| |||||||||||||||| | ||||   |||||||||| ||||||  |||||||||    
T  3621976 aaaccattagattaaaagggaacattgattttatcataggctgtctacactatatctttcttctcattg---tcttcaacctctcatgagacaccaatag 3622072  T
Q  417 acccaccacc 426  Q
    ||||||||||    
T  3622073 acccaccacc 3622082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 48470943 - 48470997
Alignment:
Q  317 aaaccactagattgaaagggaacattaatcttactataaactgtccacactatat 371  Q
    ||||||||||||| ||| |||||||||||||||| ||| |||||| |||||||||    
T  48470943 aaaccactagattaaaatggaacattaatcttaccatagactgtctacactatat 48470997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 3622644 - 3622591
Alignment:
Q  317 aaaccactagattgaaagggaacattaatcttactataaactgtccacactatat 371  Q
    |||||| |||||| ||||| |||||| ||||||||||| ||||||||||||||||    
T  3622644 aaaccattagattaaaagg-aacattgatcttactatagactgtccacactatat 3622591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 317 - 662
Target Start/End: Complemental strand, 53145475 - 53145143
Alignment:
Q  317 aaaccactagattgaaagggaacattaatcttactataaactgtccacactatatctttctttttattgtcttcttcaacctttcatgaagcaccaatag 416  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||         |||||| |||||||||    
T  53145475 aaaccactagattgaaagggaacattaatcttactataaactatccacactatatctttctttttattgtcttct---------catgaaccaccaatag 53145385  T
Q  417 acccaccaccgattccaagagccacccctaaaccattgatttcaccctaaatcttttctactcatcatcttcatcttcatcctcttcccaatcccccacc 516  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||      |||||||||||||||||||    
T  53145384 acccaccaccgattccaagagccacccctaaaccattgatttcagcctaaatcttttctgctcatcatcttcatc------ctcttcccaatcccccacc 53145291  T
Q  517 ggnnnnnnnnn--caatttcattatcttctcaaatccaaaagttatagagcatatatcttggctattgtccctaaatcaaatgacctctaacccattttc 614  Q
                 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  53145290 caaaaaaaaaaaacaatttcattatcttctcaaatccaaaagttaaagagcatatatcttggctattgtccctaaatcaaatgacctttaacccattttc 53145191  T
Q  615 taaatccatttatctttaacccatttttcctgattccaacaagcttca 662  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  53145190 taaatccagttatctttaacccatttttcctgattccaacaagcttca 53145143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 317 - 426
Target Start/End: Original strand, 37104407 - 37104513
Alignment:
Q  317 aaaccactagattgaaagggaacattaatcttactataaactgtccacactatatctttctttttattgtcttcttcaacctttcatgaagcaccaatag 416  Q
    |||||| |||||| |||||||||||| || |||  |||   ||||||||||||||||||||| | |||||||||   ||||| ||||||  |||||||||    
T  37104407 aaaccattagattaaaagggaacattgattttatcataggttgtccacactatatctttcttctcattgtcttc---aacctctcatgagacaccaatag 37104503  T
Q  417 acccaccacc 426  Q
    ||||||||||    
T  37104504 acccaccacc 37104513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 21811934 - 21811988
Alignment:
Q  317 aaaccactagattgaaagggaacattaatcttactataaactgtccacactatat 371  Q
    |||||| |||||| |||||||||||| ||||||||||| ||||||||||||||||    
T  21811934 aaaccattagattaaaagggaacattgatcttactatagactgtccacactatat 21811988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 37105070 - 37105016
Alignment:
Q  317 aaaccactagattgaaagggaacattaatcttactataaactgtccacactatat 371  Q
    |||||| |||||| |||||||||||| ||||||||||| ||||||||||||||||    
T  37105070 aaaccattagattaaaagggaacattgatcttactatagactgtccacactatat 37105016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 53144621 - 53144675
Alignment:
Q  317 aaaccactagattgaaagggaacattaatcttactataaactgtccacactatat 371  Q
    ||||||||||||| |||||||||||||||||||| ||| |||||| |||||||||    
T  53144621 aaaccactagattaaaagggaacattaatcttaccatagactgtctacactatat 53144675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 357 - 473
Target Start/End: Complemental strand, 21812553 - 21812434
Alignment:
Q  357 ctgtccacactatatctttctttttattgtcttcttcaacctttcatgaagcaccaatagacccacc------accgattccaagagccacccctaaacc 450  Q
    ||||||| |||||||||||||| | |||||||||   ||||| ||||||  ||||||||||||||||      ||||| ||||||| |||||  |||||     
T  21812553 ctgtccatactatatctttcttctcattgtcttc---aacctctcatgagacaccaatagacccaccaccaaaaccgactccaagaaccaccattaaaca 21812457  T
Q  451 attgatttcaccctaaatctttt 473  Q
    |||||||||| ||||||||||||    
T  21812456 attgatttcagcctaaatctttt 21812434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 317 - 662
Target Start/End: Original strand, 55010898 - 55011232
Alignment:
Q  317 aaaccactagattgaaagggaacattaatcttactataaactgtccacactatatctttctttttattgtcttcttcaacctttcatgaagcaccaatag 416  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||         |||||| |||||||||    
T  55010898 aaaccactagattgaaagggaacattaatcttactataaactatccacactatatctttctttttattgtcttct---------catgaaccaccaatag 55010988  T
Q  417 acccaccaccgattccaagagccacccctaaaccattgatttcaccctaaatcttttctactcatcatcttcatcttcatcctcttcccaatcccccacc 516  Q
    ||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| |||||||||||||||      |||||||||||||||||||    
T  55010989 acccaccaccgattccaagagtcaaccctaaaccattgatttcagcctaaatcttttctgctcatcatcttcatc------ctcttcccaatcccccacc 55011082  T
Q  517 ggnnnnnnnnn----caatttcattatcttctcaaatccaaaagttatagagcatatatcttggctattgtccctaaatcaaatgacctctaacccattt 612  Q
                   |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  55011083 caaaaaaaaaaaaaacaatttcattatcttctcaaatccaaaagttaaagagcatatatcttggctattgttcctaaatcaaatgacctttaacccattt 55011182  T
Q  613 tctaaatccatttatctttaacccatttttcctgattccaacaagcttca 662  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  55011183 tctaaatccagttatctttaacccatttttcctgattccaacaagcttca 55011232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 317 - 426
Target Start/End: Complemental strand, 37275806 - 37275700
Alignment:
Q  317 aaaccactagattgaaagggaacattaatcttactataaactgtccacactatatctttctttttattgtcttcttcaacctttcatgaagcaccaatag 416  Q
    |||||| |||||| |||||||||||| || |||  ||| |||||||| |||||||||||||| | ||||   |||||||||| |||| |  |||||||||    
T  37275806 aaaccattagattaaaagggaacattgattttatcatagactgtccatactatatctttcttctcattg---tcttcaacctctcataagacaccaatag 37275710  T
Q  417 acccaccacc 426  Q
    ||||||||||    
T  37275709 acccaccacc 37275700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 37275143 - 37275197
Alignment:
Q  317 aaaccactagattgaaagggaacattaatcttactataaactgtccacactatat 371  Q
    |||||| |||||| |||||||||||| ||||||||||| ||||||||||||||||    
T  37275143 aaaccattagattaaaagggaacattgatcttactatagactgtccacactatat 37275197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 55011741 - 55011687
Alignment:
Q  317 aaaccactagattgaaagggaacattaatcttactataaactgtccacactatat 371  Q
    ||||||||||||| |||||||||||||||||||||||| |||||| | |||||||    
T  55011741 aaaccactagattaaaagggaacattaatcttactatagactgtctatactatat 55011687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 378
Target Start/End: Complemental strand, 198999 - 198944
Alignment:
Q  323 ctagattgaaagggaacattaatcttactataaactgtccacactatatctttctt 378  Q
    |||||| || |||||||||| || ||||||||| || |||||||||||||||||||    
T  198999 ctagatggatagggaacattgattttactataagctatccacactatatctttctt 198944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 4e-92; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 317 - 613
Target Start/End: Complemental strand, 31111395 - 31111102
Alignment:
Q  317 aaaccactagattgaaagggaacattaatcttactataaactgtccacactatatctttctttttattgtcttcttcaacctttcatgaagcaccaatag 416  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   ||||| ||||||| |||||||||    
T  31111395 aaaccactagattgaaagggaacattaatcttactatcaactgtccacactatatctttctttttattgtcttc---aacctctcatgaaccaccaatag 31111299  T
Q  417 acccaccaccgattccaagagccacccctaaaccattgatttcaccctaaatcttttctactcatcatcttcatcttcatcctcttcccaatcccccacc 516  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||      |||||||||| ||||||||||||    
T  31111298 acccaccaccgattccaagaaccacccctaaaccattgatttcagcctaaatcttttctgctcatcatctt------catcctcttctcaatcccccacc 31111205  T
Q  517 ------ggnnnnnnnnncaatttcattatcttctcaaatccaaaagttatagagcatatatcttggctattgtccctaaatcaaatgacctctaacccat 610  Q
                     |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31111204 caaaaaaaaaaaaaaaacaatttcattatcttctcaaatccaaaagttaaagagcatatatcttggctattgtccctaaatcaaatgacctttaacccat 31111105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 2458347 - 2458293
Alignment:
Q  317 aaaccactagattgaaagggaacattaatcttactataaactgtccacactatat 371  Q
    |||||| |||||| |||||||||||| ||||||||||| ||||||||||||||||    
T  2458347 aaaccattagattaaaagggaacattgatcttactatagactgtccacactatat 2458293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 317 - 426
Target Start/End: Original strand, 2457698 - 2457804
Alignment:
Q  317 aaaccactagattgaaagggaacattaatcttactataaactgtccacactatatctttctttttattgtcttcttcaacctttcatgaagcaccaatag 416  Q
    |||||| || ||| |||||||||||| || |||  |||  |||||| ||||||||||||||| | ||||   |||||||||| ||||||  |||||||||    
T  2457698 aaaccattaaattaaaagggaacattgattttatcataggctgtccgcactatatctttcttctcattg---tcttcaacctctcatgagacaccaatag 2457794  T
Q  417 acccaccacc 426  Q
    ||||||||||    
T  2457795 acccaccacc 2457804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 31110541 - 31110595
Alignment:
Q  317 aaaccactagattgaaagggaacattaatcttactataaactgtccacactatat 371  Q
    ||||||||||||| |||||||||||||||||||| ||| |||||| ||| |||||    
T  31110541 aaaccactagattaaaagggaacattaatcttaccatagactgtctacattatat 31110595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 628 - 662
Target Start/End: Complemental strand, 31111115 - 31111081
Alignment:
Q  628 ctttaacccatttttcctgattccaacaagcttca 662  Q
    ||||||||||||||| |||||||||||||||||||    
T  31111115 ctttaacccattttttctgattccaacaagcttca 31111081  T

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Target: chr7 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 663
Target Start/End: Complemental strand, 39318146 - 39318018
Alignment:
Q  534 cattatcttctcaaatccaaaagttatagagcatatatcttggctattgtccctaaatcaaatgacctctaacccattttctaaatccatttatctttaa 633  Q
    |||||||||||||||||||||||||| | ||||| |||||||||||||||||| ||||||||||| || |||||||||||||||||| | ||||||||||    
T  39318146 cattatcttctcaaatccaaaagttaaatagcatgtatcttggctattgtcccaaaatcaaatgagctttaacccattttctaaatcgagttatctttaa 39318047  T
Q  634 cccatttttcctgattccaacaagcttcat 663  Q
    |||| | |||||||||||||||||||||||    
T  39318046 ccca-tattcctgattccaacaagcttcat 39318018  T

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Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 44972192 - 44972017
Alignment:
Q  115 tcatccgcaattcgagcaagtgaaatattgacattagcattttgatgtatcaaattacttggaatgtaattaaatttaggaagatcctcacttccagttt 214  Q
    ||||||| ||| ||||||||||||||||| ||||| ||| ||||||  ||    |||| |||||| ||||||||||| |||| |||||||||    ||||    
T  44972192 tcatccgtaatccgagcaagtgaaatattaacatttgcactttgatacattgtgttacatggaatataattaaattttggaaaatcctcactgttggttt 44972093  T
Q  215 catcaaataatgagatttcaacattttat---gaaccttttgttatgtcattgacatatcgaaaggatttattttt 287  Q
    | || |||||||| |||| ||  |||| |   ||||||||||||||||| | |||||||||||||||||| |||||    
T  44972092 cctctaataatgatattttaatgtttttttcagaaccttttgttatgtcttcgacatatcgaaaggattttttttt 44972017  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 32666698 - 32666742
Alignment:
Q  317 aaaccactagattgaaagggaacattaatcttactataaactgtc 361  Q
    ||||||||||||| |||||||||||||||||||| ||| ||||||    
T  32666698 aaaccactagattaaaagggaacattaatcttaccatagactgtc 32666742  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 471
Target Start/End: Original strand, 32666804 - 32666845
Alignment:
Q  430 tccaagagccacccctaaaccattgatttcaccctaaatctt 471  Q
    |||||||||||||||||||| | |||||||| ||||||||||    
T  32666804 tccaagagccacccctaaacaaatgatttcagcctaaatctt 32666845  T

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Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 115 - 287
Target Start/End: Original strand, 7724120 - 7724292
Alignment:
Q  115 tcatccgcaattcgagcaagtgaaatattgacattagcattttgatgtatcaaattacttggaatgtaattaaatttaggaagatcctcacttccagttt 214  Q
    |||||| |||| ||||||||||||||||| ||||| ||| ||||||  ||    |||| ||||||||||||||||||  ||| |||||||||    ||||    
T  7724120 tcatccacaatccgagcaagtgaaatattaacatttgcactttgatacattgttttacatggaatgtaattaaattttagaatatcctcactgttggttt 7724219  T
Q  215 catcaaataatgagatttcaacattttatgaaccttttgttatgtcattgacatatcgaaaggatttattttt 287  Q
    | || |||||||| |||| ||  ||||  ||||||||||||||||| | |||||||| ||| ||||| |||||    
T  7724220 cgtctaataatgatattttaatgttttccgaaccttttgttatgtcttcgacatatcaaaatgatttcttttt 7724292  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 2650284 - 2650357
Alignment:
Q  317 aaaccactagattgaaagggaacattaatcttactataaactgtccacactatatctttctttttattgtcttc 390  Q
    |||||| |||||| ||||||||||||||| |||  |||  || ||||||||||||||||||| | |||||||||    
T  2650284 aaaccattagattaaaagggaacattaattttatcataggctatccacactatatctttcttctcattgtcttc 2650357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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