View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_32 (Length: 300)
Name: NF10131_low_32
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 2 - 285
Target Start/End: Complemental strand, 3619731 - 3619439
Alignment:
| Q |
2 |
aagcaaagggtaatgaagaggaaaaaagaataatatgaggttcaaagaataacaggcaacttcttcggtttcctcaagggtacaaactttgctcctattg |
101 |
Q |
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| T |
3619731 |
aagcatagtgtaatgaagaggaaaaaagaataatatgaggttcaaagtataccaggcaacttcttcggtttcctcaagggtacaaactttgctcctattg |
3619632 |
T |
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| Q |
102 |
ctagggcaatgggaggaccaaaaatgaaacctcgagcttcgattcctaaagattaaagaagagaagaagaataagttcaccac-aacacatgatttgaca |
200 |
Q |
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| T |
3619631 |
ctagggcaatgggaggaccaaaaatgaaaccacgagcttcgattcctaaagattaaagaagagaagaagaataagttcaccacaaacacatgatttgaca |
3619532 |
T |
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| Q |
201 |
attatgcaagt--------tagtgtgttactactactttataaacatggaggaaagggtgacatgaaataatcaatttttccattctgtttct |
285 |
Q |
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| T |
3619531 |
gtaatgcaagttatattactagtgtgttactactactttataaacatggaggaaagggtgacatgaaataatcaatttttccattctgtttct |
3619439 |
T |
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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 41960344 - 41960422
Alignment:
| Q |
54 |
caggcaacttcttcggtttcctcaagggtacaaactttgctcctattgctagggcaatgggaggaccaaaaatgaaacc |
132 |
Q |
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|||||||||| || ||||||||||| |||||||| |||||||||||||| | |||||||||||||||||||| ||||| |
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| T |
41960344 |
caggcaacttttttggtttcctcaatggtacaaattttgctcctattgccaatgcaatgggaggaccaaaaataaaacc |
41960422 |
T |
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