View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10131_low_33 (Length: 300)

Name: NF10131_low_33
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10131_low_33
NF10131_low_33
[»] chr1 (4 HSPs)
chr1 (1-225)||(26617601-26617825)
chr1 (15-276)||(35150444-35150710)
chr1 (15-282)||(9928206-9928478)
chr1 (217-282)||(26616842-26616907)
[»] chr7 (5 HSPs)
chr7 (15-279)||(12077831-12078100)
chr7 (19-135)||(9348975-9349096)
chr7 (82-254)||(20964102-20964275)
chr7 (160-260)||(24409231-24409331)
chr7 (32-72)||(25114008-25114048)
[»] chr5 (1 HSPs)
chr5 (15-121)||(18552639-18552750)
[»] chr4 (2 HSPs)
chr4 (82-133)||(3441766-3441817)
chr4 (160-240)||(32930566-32930646)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 26617825 - 26617601
Alignment:
Q  1 gcataaaggagaaaaactcattttcattctcccaaagtttaaggtttcgatgcttccttagactccaaagaatagttgcgctgaacatgttcctgggata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  26617825 gcataaaggagaaaaactcattttcattctcccaaagtttaaggtttcaatgcttccatagactccaaagaatagttgcgctgaacatgttcctggtata 26617726  T
Q  101 aattttgcaacaaggaaaatatagcatctatagtcgaatttgtgatgagaaccgtatgatttacctcattccatagtccagccatttgccatacttgcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26617725 aattttgcaacaaggaaaatatagcatctatagtcgaatttgtgatgagaaccatatgatttacctcattccatagtccagccatttgccatacttgcac 26617626  T
Q  201 ttcaaaaggacaatcaaatataata 225  Q
    |||||||||||||||||||||||||    
T  26617625 ttcaaaaggacaatcaaatataata 26617601  T

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Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 15 - 276
Target Start/End: Complemental strand, 35150710 - 35150444
Alignment:
Q  15 aactcattttcattctcccaaagtttaaggtttcgatgcttccttagactccaaagaatagttgcgct-----gaacatgttcctgggataaattttgca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| || |  |     |||||||||| || |||||||||||||    
T  35150710 aactcattttcattctcccaaagtttaaggtttcgatgcttccacagactccaaagaatatttaccatacagtgaacatgttcttgtgataaattttgca 35150611  T
Q  110 acaaggaaaatatagcatctatagtcgaatttgtgatgagaaccgtatgatttacctcattccatagtccagccatttgccatacttgcacttcaaaagg 209  Q
    |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||||||||||| ||| ||||||||| |||||||    
T  35150610 acaaggaaaatatagcatctatagacgaatttgtgataagaaccgcatgatttacctcactccatagtccagccattttccaaacttgcactgcaaaagg 35150511  T
Q  210 acaatcaaatataatatgtgcaagatcttcatggttagaactacagctaacgcattctgttgaacat 276  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||| || | ||||||||||    
T  35150510 acaatcaaatataatatgtgtaagatcttcatggttagaactacaactaacacaatttgttgaacat 35150444  T

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Target: chr1; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 9928478 - 9928206
Alignment:
Q  15 aactcattttcattctcccaaagtttaaggtttcgatgcttccttagactccaaagaatagttg-----cgctgaacatgttcctgggataaattttgca 109  Q
    |||||||||||||| ||||||||||||||||||||||||||||  | ||||| ||| |||| ||     |  |||||||||||||| |||||||||||||    
T  9928478 aactcattttcattttcccaaagtttaaggtttcgatgcttccacaaactcctaagtatagctgtcatacattgaacatgttcctgtgataaattttgca 9928379  T
Q  110 acaaggaaaatatagcatctatagtcgaatttgtgatgagaaccgtatgatttacctcattccatagtccagccatttgccatacttgcacttcaaaagg 209  Q
    ||||||||||||||| ||||||||| |||| |||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||| |  |||||     
T  9928378 acaaggaaaatatagtatctatagttgaatctgtgatgagaacctcatgatttacctcattccatagtccaaccatttgccatacttgcattgaaaaagt 9928279  T
Q  210 acaatcaaatataatatgtgcaagatcttcatggttagaactacagctaacgcattctgttgaacattgaacc 282  Q
    ||||| |||||||||||||||||||| |||||||||||||||| ||||||| || | | ||||||||||||||    
T  9928278 acaataaaatataatatgtgcaagattttcatggttagaactagagctaacacaatttattgaacattgaacc 9928206  T

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Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 26616907 - 26616842
Alignment:
Q  217 aatataatatgtgcaagatcttcatggttagaactacagctaacgcattctgttgaacattgaacc 282  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26616907 aatataatatttgcaagatcttcatggttagaactacagctaacgcattctgttgaacattgaacc 26616842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 12077831 - 12078100
Alignment:
Q  15 aactcattttcattctcccaaagtttaaggtttcgatgcttccttagactccaaagaatagttg-----cgctgaacatgttcctgggataaattttgca 109  Q
    |||||||||||||||| |||| ||||||||||  ||||||||   |||||||||| |||| |||     |  |||||||||||||  ||| |||||||||    
T  12077831 aactcattttcattcttccaatgtttaaggttatgatgcttctagagactccaaaaaataattgtcgtacattgaacatgttcctatgatgaattttgca 12077930  T
Q  110 acaaggaaaatatagcatctatagtcgaatttgtgatgagaaccgtatgatttacctcattccatagtccagccatttgccatacttgcacttcaaaagg 209  Q
    ||||| |||||||||||| ||||| ||| |||||||| |||||| | ||||||||| ||||||| || | |||||||| ||| ||||| ||  ||||| |    
T  12077931 acaagaaaaatatagcatatatagacgagtttgtgataagaaccatgtgatttaccccattccaaagccgagccattttccaaacttgaaccgcaaaaag 12078030  T
Q  210 acaatcaaatataatatgtgcaagatcttcatggttagaactacagctaacgcattctgttgaacattga 279  Q
    |||||||||   |||||||| ||| ||||||||| ||||| |||| |||||||||| ||||| |||||||    
T  12078031 acaatcaaaagcaatatgtgaaaggtcttcatggatagaattacaactaacgcattttgttggacattga 12078100  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 9349096 - 9348975
Alignment:
Q  19 cattttcattctcccaaagtttaaggtttcgatgcttccttagactccaaagaatagttgc-----gctgaacatgttcctgggataaattttgcaacaa 113  Q
    |||||| | ||| |||||||||||||||  |||| ||||  ||||||||||||||||||||     | |||||| ||||||| || ||||||| ||| ||    
T  9349096 cattttaactcttccaaagtttaaggttctgatgtttccgaagactccaaagaatagttgccatacgttgaacaagttcctgtgaaaaattttacaagaa 9348997  T
Q  114 ggaaaatatagcatctatagtc 135  Q
    ||||||||||||||||||||||    
T  9348996 ggaaaatatagcatctatagtc 9348975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 254
Target Start/End: Complemental strand, 20964275 - 20964102
Alignment:
Q  82 tgaacatgttcctgggataaattttgcaacaag-gaaaatatagcatctatagtcgaatttgtgatgagaaccgtatgatttacctcattccatagtcca 180  Q
    ||||||||||| || |||||||||||||||||  ||||||||| |||||| |  |||||| ||||| | ||||| |||||| ||||| ||||| || | |    
T  20964275 tgaacatgttcttgtgataaattttgcaacaaaagaaaatataacatctacaaccgaattagtgataataaccgcatgattaacctcgttccaaagacaa 20964176  T
Q  181 gccatttgccatacttgcacttcaaaaggacaatcaaatataatatgtgcaagatcttcatggttagaactaca 254  Q
     |||||| | |||| ||||   |||||||||| |||||   |||||||| ||| ||||||||||||||| ||||    
T  20964175 accattttctatacctgcaacgcaaaaggacattcaaaagcaatatgtgtaaggtcttcatggttagaattaca 20964102  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 24409231 - 24409331
Alignment:
Q  160 tttacctcattccatagtccagccatttgccatacttgcacttcaaaaggacaatcaaatataatatgtgcaagatcttcatggttagaactacagctaa 259  Q
    ||||||||| |||| |  || ||||||||| | |||| ||  ||||||||||| | ||| |||||||| |||||||||||||| || ||| |||| ||||    
T  24409231 tttacctcactccaaatacctgccatttgctacacttacatctcaaaaggacactaaaaaataatatgagcaagatcttcatgatttgaattacaactaa 24409330  T
Q  260 c 260  Q
    |    
T  24409331 c 24409331  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 25114008 - 25114048
Alignment:
Q  32 ccaaagtttaaggtttcgatgcttccttagactccaaagaa 72  Q
    |||||||||||| ||||||||||||| ||||| ||||||||    
T  25114008 ccaaagtttaagatttcgatgcttccatagacgccaaagaa 25114048  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 18552750 - 18552639
Alignment:
Q  15 aactcattttcattctcccaaagtttaaggtttcgatgcttccttagactccaaagaatagttg-----cgctgaacatgttcctgggataaattttgca 109  Q
    |||||||| ||||||||| ||| ||||||||||||||| ||||  |  ||||||||||||| ||     ||||| |||||||| || |||||||||||||    
T  18552750 aactcattctcattctcctaaattttaaggtttcgatgtttccacatgctccaaagaatagctgccatacgctggacatgttcatgtgataaattttgca 18552651  T
Q  110 acaaggaaaata 121  Q
    ||||||||||||    
T  18552650 acaaggaaaata 18552639  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 3441817 - 3441766
Alignment:
Q  82 tgaacatgttcctgggataaattttgcaacaaggaaaatatagcatctatag 133  Q
    ||||||||||||||  |||||||||||||||||||||| || ||||||||||    
T  3441817 tgaacatgttcctgatataaattttgcaacaaggaaaagattgcatctatag 3441766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 32930646 - 32930566
Alignment:
Q  160 tttacctcattccatagtccagccatttgccatacttgcacttcaaaaggacaatcaaatataatatgtgcaagatcttca 240  Q
    ||||||||| |||| |  |||||||||||||| ||||||| | |||||||||| |  || |||||||| ||||||||||||    
T  32930646 tttacctcactccaaataccagccatttgccacacttgcattacaaaaggacacttcaaaataatatgagcaagatcttca 32930566  T

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