View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_40 (Length: 276)
Name: NF10131_low_40
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 33554561 - 33554290
Alignment:
| Q |
1 |
tttaattaattaaccctcattcttgttattttgatgatacagcttattggaagccattgatctcatactccagggagcacagaatcttgtggtgccaatt |
100 |
Q |
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| T |
33554561 |
tttaattaattaacccttattcttgttattttgatgatacagcttattggaagccattgatctcatactccagggagcacagaatcttgtggtgccaatt |
33554462 |
T |
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| Q |
101 |
ttgcaaacaaaaagaggtggaatttcaaggagaaaacagcaacaaaagtcatcaacaatcaacaaccacaacggtgttgaattctgttggttaacacaag |
200 |
Q |
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| T |
33554461 |
ttgcaaacaaaaagaggtggaatttcaaggagaaaacagcaacaaaagtcatcaacaatcaacaaccacaacggtgttgaattctgttggttaacacaag |
33554362 |
T |
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| Q |
201 |
aggatgtgatcaggttcttgcttggttccattggcctcttcactccactccctgcatactcctttgcttctc |
272 |
Q |
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| T |
33554361 |
aggatgtgatcaggttcttgcttggttccattggcctcttcactccactccctgcatactccattgattctc |
33554290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 33541320 - 33541085
Alignment:
| Q |
21 |
tcttgttattttgatgatacagcttattggaagccattgatctcatactccagggagcacagaatcttgtggtgccaattttgcaaacaaaaagaggtgg |
120 |
Q |
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| T |
33541320 |
tcttgttaatttgatgttacagcttattggatgccattgatctcatacttgagggggcacaaaatcttgtggtgccaatttcgcagacaaaaaaaggtgg |
33541221 |
T |
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| Q |
121 |
aatttcaaggagaaaacagcaacaaaagtcatcaacaatcaacaaccacaacggtgttgaattctgttggttaacacaagaggatgtgatcaggttcttg |
220 |
Q |
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| T |
33541220 |
cctttcaaggagaaaactgcagcagaagtcattaacaatcaacagccacaatggtgttgagttctgctggttaacacaagaggatgtgatcaggttcttg |
33541121 |
T |
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| Q |
221 |
cttggttccattggcctcttcactccactccctgca |
256 |
Q |
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| T |
33541120 |
cttggttccattggccgcttcagtgcactccctgca |
33541085 |
T |
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