View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_45 (Length: 260)
Name: NF10131_low_45
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 33334143 - 33333898
Alignment:
| Q |
1 |
tacgctttcttctcattctctctgattcacaaaatcatcaaccctaaaaaccctaataattgtttctgttattgttgcttcttgaacaagcttccattgc |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33334143 |
tacgctttcttctcgttctctctgattcacaaaatcatcaaccctaaaaaccctaataattgtttctgttattgttgcttcttgaacaagcttccattgc |
33334044 |
T |
|
| Q |
101 |
tgcgctaatagttattgagtcagactctctacaattgtgtacttggttgtataaggaacttctctccatcaccctttcatcaaagagatttgacaatttc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33334043 |
tgcgctaatagttattgagtcagactctctacaattgtgtacttggttgtataaggaacttctctccatcaccctttcatcaaagagatttgacaatttc |
33333944 |
T |
|
| Q |
201 |
agtatttggaatggatttcttcttttgtcatactctttcgaatgcc |
246 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33333943 |
agtatttggaatggatttcttcttttgtcatactctttcgaatgcc |
33333898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 7888105 - 7887991
Alignment:
| Q |
5 |
ctttcttctcattctctctgattcacaaaatcatcaac----------cctaaaaaccctaataattgtttctgttattgttgcttcttgaacaa-gctt |
93 |
Q |
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|||||||||||| |||||| ||||||||||||||||| |||| |||||||||||| | ||||||||||| ||| || |||||||| |||| |
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| T |
7888105 |
ctttcttctcatcctctctaattcacaaaatcatcaaaactagaaaaacctagaaaccctaataactatttctgttatttttgtttgttgaacaatgctt |
7888006 |
T |
|
| Q |
94 |
ccattgctgcgctaa |
108 |
Q |
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||||||||||||||| |
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| T |
7888005 |
ccattgctgcgctaa |
7887991 |
T |
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