View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_48 (Length: 252)
Name: NF10131_low_48
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_48 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 32515938 - 32516175
Alignment:
| Q |
11 |
cacagaaggggttatattagtaggcaatctaacttacaacaaataaaaatgtgactagcatctaattcttccaattattttcttgatccaatttccccac |
110 |
Q |
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| T |
32515938 |
cacagaaggggttatattagtaggcaatctaacttacaacaaataaaaatgtgactagcatctaattcttccaattattttcttgatccaatttcctcac |
32516037 |
T |
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| Q |
111 |
aataaaacaaaaacaaatgataacaagatcaagagcnnnnnnnnnnncagcaaaatcagcagtgtttctattttcttttaattaattaacaaaatcagca |
210 |
Q |
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| T |
32516038 |
aataaaacaaaaacaaatgataacaagatcaagagcaaaaaaaa----agcaaaatcagcagtgtttctattttctttcaattaattaacaaaatcagca |
32516133 |
T |
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| Q |
211 |
gtgtttctattcacctcaattaacaaaatgaaacatcctcat |
252 |
Q |
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| T |
32516134 |
gtgtttctattcacctcaattaacaaaatgaaacatcctcat |
32516175 |
T |
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