View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10131_low_5 (Length: 627)

Name: NF10131_low_5
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10131_low_5
NF10131_low_5
[»] chr5 (12 HSPs)
chr5 (6-610)||(24654166-24654753)
chr5 (6-283)||(29417604-29417872)
chr5 (313-565)||(29417916-29418169)
chr5 (18-199)||(16487522-16487703)
chr5 (18-216)||(42835341-42835536)
chr5 (71-178)||(42797112-42797219)
chr5 (65-177)||(42782270-42782382)
chr5 (20-151)||(40415093-40415224)
chr5 (18-115)||(42841402-42841499)
chr5 (20-48)||(21698846-21698874)
chr5 (64-124)||(42638158-42638218)
chr5 (20-48)||(42729357-42729385)
[»] chr2 (3 HSPs)
chr2 (339-391)||(37998889-37998941)
chr2 (22-149)||(16920098-16920225)
chr2 (50-130)||(44142275-44142355)
[»] scaffold0129 (1 HSPs)
scaffold0129 (63-166)||(9575-9678)
[»] chr8 (2 HSPs)
chr8 (26-113)||(15632165-15632252)
chr8 (71-120)||(3368680-3368729)
[»] chr6 (1 HSPs)
chr6 (65-163)||(21379306-21379404)
[»] chr4 (1 HSPs)
chr4 (72-125)||(11000039-11000092)
[»] scaffold0068 (1 HSPs)
scaffold0068 (20-48)||(15036-15064)


Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 6 - 610
Target Start/End: Complemental strand, 24654753 - 24654166
Alignment:
Q  6 aggagcagagaggtatcatcataataagaatgatcctttgttacgaaatgatagcggtacatggtcatgaaataagggttatctaataaaagggaccatg 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24654753 aggaggagagaggtatcatcataataagaatgatcctttgttacgaaatgatagcggtacatggtcatgaaataagggttatctaataaaagggaccatg 24654654  T
Q  106 atttacgtacacaaccaaaacgcttgaatgattttataggtaatttggaaagaatagaaaaggaaagatcattaggaatatatgattggcttcttcttac 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  24654653 atttacgtacacaaccaaaacgcttgaatgattttataggtaatttggaaagaatagagaaggaaagatcattaggaatatgtgattggcttcttcttac 24654554  T
Q  206 ctttacattcttattcttctgtttatttgaatttgacgacaacgcagccacacatctctccattcttctgttcttcaactaggattagggttttagtcag 305  Q
    |||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||   ||   | |||  ||||    |   ||    
T  24654553 ctttacattct---------gtttatttgaatttgacgacaacgcagccacacatctctccattcttctgtg--tcg--tggga--aggg----aagaag 24654473  T
Q  306 agttgaagttttcagattcaagattagggttttagtcaaagtcaaaagggattaaaatgttattttattttttataacttattctcccacatacgaggga 405  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  24654472 agttggagttttcagattcaagattagggttttagtcaaagtcaaaagggattaaaatgttattttattttttataacttattctcccacatatggggga 24654373  T
Q  406 tggaattaatttctcaac-aactattccatggaacattgctttatagtcgttgttgacagaatcataactaagttcacgatggtcaagcacaacactcca 504  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| |    
T  24654372 tggaattaatttctcaacaaactattccatggaacattgctttatagtcgttgttgacagaatcataaccaagttcacgatggttaagcaaaacactcaa 24654273  T
Q  505 attaggtctaaaat-caaaaaggttggaaggaatgagcttaaatttcttagtggttggattcgatagcataatatttcttttgaatgtacaaacaaaaat 603  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||  |||| |||||||||||||||||    
T  24654272 attaggtccaaaatacaaaagggttggaaggaatgagcttaaatttcttagtggtttgattcgataacataattttcttttttaatgtacaaacaaaaat 24654173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 283
Target Start/End: Original strand, 29417604 - 29417872
Alignment:
Q  6 aggagcagagaggtatcatcataataagaatgatcctttgttacgaaatgatagcggtacatggtcatgaaataagggttatctaataaaagggaccatg 105  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29417604 aggaggagagaggtattatcataataagaatgatcctttgttacgaaatgatagcggtacatggtcatgaaataagggttatctaataaaagggaccatg 29417703  T
Q  106 atttacgtacacaaccaaaacgcttgaatgattttataggtaatttggaaagaatagaaaaggaaagatcattaggaatatatgattggcttcttcttac 205  Q
    ||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  29417704 atttatgtacacaaccaaaacgcttcaatggttttataggtaatttggaaagaatagagaaggaaagatcattaggaatatgtgattggcttcttcttac 29417803  T
Q  206 ctttacattcttattcttctgtttatttgaatttgacgacaacgcagccacacatctctccattcttctgttcttcaa 283  Q
    | |||||         || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  29417804 c-ttaca--------attttgtttatttgactttgacgagaacgcagccacacatctctccattcttctgttcttcaa 29417872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 313 - 565
Target Start/End: Original strand, 29417916 - 29418169
Alignment:
Q  313 gttttcagattcaagattagggttttagtcaaagtcaaaagggattaaaatgttattttatt------ttttataacttattctcccacatacgagggat 406  Q
    ||||||||||||| | ||||||||||||| |||||||||||| |||||||| || |||| ||      |||||||||||||||||||||||| | |||      
T  29417916 gttttcagattcacg-ttagggttttagttaaagtcaaaagg-attaaaatattttttttttatttttttttataacttattctcccacatatgggggcc 29418013  T
Q  407 ggaattaatttc-tcaacaactatt--ccatggaacattgctttatagtcgttgttgacagaatcataactaagttcacgatggtcaagcacaacactcc 503  Q
     ||||||||||| ||||||||||||  |||||||| ||  |||||||||||||      | |||||||||  | ||||| ||||||||||| ||||  ||    
T  29418014 agaattaatttcgtcaacaactatttcccatggaaaatcactttatagtcgtt------aaaatcataaccgaattcactatggtcaagcaaaacatgcc 29418107  T
Q  504 aattaggtctaaaatcaaaaaggttggaaggaatgagcttaaatttcttagtggttggattc 565  Q
    ||||||||| |||||||||| |||||| ||||||||||||||||| |||||||| |||||||    
T  29418108 aattaggtccaaaatcaaaagggttgggaggaatgagcttaaattccttagtggctggattc 29418169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 16487522 - 16487703
Alignment:
Q  18 gtatcatcataataagaatgatcctttgttacgaaatgatagcggtacatggtcatgaaataagggttatctaataaaagggaccatgatttacgtacac 117  Q
    ||||||| ||||||||||||||||||||||| || || || ||| ||||| ||||||||||  |||||||| |||||||| |||||||||||  |||| |    
T  16487522 gtatcatgataataagaatgatcctttgttaagagattattgcgatacatagtcatgaaatgtgggttatcaaataaaagcgaccatgatttgtgtacgc 16487621  T
Q  118 aaccaaaacgcttgaatgattttataggtaatttggaaagaatagaaaaggaaagatcattaggaatatatgattggcttct 199  Q
    | ||||| | ||| || ||||| ||||||| ||| || |||| ||| ||| ||||||||||||  |||| ||| ||||||||    
T  16487622 atccaaacctcttcaaagatttgataggtagttttgagagaagagagaagaaaagatcattagatatatgtgactggcttct 16487703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 42835341 - 42835536
Alignment:
Q  18 gtatcatcataataagaatgatcctttgttacgaaatgatagcggtacatggtcatgaaataagggttatctaataaaagggaccatgatttacgtacac 117  Q
    ||||| |||||||||| ||||| |||||||| ||||   | ||| ||||| |||||||||||| | ||||| || |||||||||||||||||  |||| |    
T  42835341 gtatcgtcataataaggatgattctttgttaagaaagagttgcgatacatagtcatgaaataaagattatcaaacaaaagggaccatgatttgtgtacgc 42835440  T
Q  118 aaccaaaacgcttgaatgattttataggtaatttggaaagaatagaaaaggaaagatcattaggaatatatgattggcttcttcttacctttacattct 216  Q
    | ||||| ||||| || ||||| ||||  | |||||| |||||| | ||| ||||||||||||| ||||  ||||||    ||||||||||||||||||    
T  42835441 atccaaatcgcttcaaagatttaatagacattttggagagaataaagaagaaaagatcattaggtatatgagattgg---tttcttacctttacattct 42835536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 71 - 178
Target Start/End: Original strand, 42797112 - 42797219
Alignment:
Q  71 catgaaataagggttatctaataaaagggaccatgatttacgtacacaaccaaaacgcttgaatgattttataggtaatttggaaagaatagaaaaggaa 170  Q
    ||||||||||| |||||  ||||  ||| ||||||||||| ||||| | | ||| ||||| || ||||| ||||||||||| || |||||||| ||| ||    
T  42797112 catgaaataagagttatggaatacgaggaaccatgatttaagtacatatcaaaatcgcttcaaagatttaataggtaattttgagagaatagagaagaaa 42797211  T
Q  171 agatcatt 178  Q
    ||||||||    
T  42797212 agatcatt 42797219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 177
Target Start/End: Complemental strand, 42782382 - 42782270
Alignment:
Q  65 catggtcatgaaataagggttatctaataaaagggaccatgatttacgtacacaaccaaaacgcttgaatgattttataggtaatttggaaagaatagaa 164  Q
    |||| |||||||| |||| || || |||| ||| ||||||||||||||||| || ||||| ||||| || ||||| || |||||||| || ||||| ||     
T  42782382 catgttcatgaaaaaaggattttcaaatagaagtgaccatgatttacgtacgcatccaaatcgcttcaaagatttaatcggtaattttgatagaattgag 42782283  T
Q  165 aaggaaagatcat 177  Q
    |||| || |||||    
T  42782282 aaggtaatatcat 42782270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 40415224 - 40415093
Alignment:
Q  20 atcatcataataagaatgatcctttgttacgaaatgatagcggtacatggtcatgaaataagggttatctaataaaagggaccatgatttacgtacacaa 119  Q
    ||||| |||||||| ||| ||  |||||| || || || ||| ||||| ||||||||||| |  ||||| |||||||| || |||||||| | ||||||     
T  40415224 atcatgataataaggatgttctcttgttaagagattattgcgatacatagtcatgaaatatgaattatcaaataaaagcgatcatgatttgcatacacat 40415125  T
Q  120 ccaaaacgcttgaatgattttataggtaattt 151  Q
    ||||| | ||| || ||||| |||||||||||    
T  40415124 ccaaacctcttcaaagatttgataggtaattt 40415093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 42841402 - 42841499
Alignment:
Q  18 gtatcatcataataagaatgatcctttgttacgaaatgatagcggtacatggtcatgaaataagggttatctaataaaagggaccatgatttacgtac 115  Q
    |||||||||||| |||||||| | || |||| |||||  | ||||||||| ||||| |||| | | ||||| ||||| || |||||||||||| ||||    
T  42841402 gtatcatcataaaaagaatgacctttggttaagaaatagttgcggtacatagtcataaaatcatgattatcaaataatagagaccatgatttatgtac 42841499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 21698874 - 21698846
Alignment:
Q  20 atcatcataataagaatgatcctttgtta 48  Q
    |||||||||||||||||||||||||||||    
T  21698874 atcatcataataagaatgatcctttgtta 21698846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 42638158 - 42638218
Alignment:
Q  64 acatggtcatgaaataagggttatctaataaaagggaccatgatttacgtacacaaccaaa 124  Q
    |||||||| |||||||||| |||||||| || |  ||||| |||||||| |||||||||||    
T  42638158 acatggtcttgaaataaggattatctaacaagaaagaccaagatttacgcacacaaccaaa 42638218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 42729385 - 42729357
Alignment:
Q  20 atcatcataataagaatgatcctttgtta 48  Q
    |||||||||||||||||||||||||||||    
T  42729385 atcatcataataagaatgatcctttgtta 42729357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 37998889 - 37998941
Alignment:
Q  339 agtcaaagtcaaaagggattaaaatgttattttattttttataacttattctc 391  Q
    ||||||||||||||||| |||| || |||||||||||||||||||||||||||    
T  37998889 agtcaaagtcaaaaggggttaagatattattttattttttataacttattctc 37998941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 16920225 - 16920098
Alignment:
Q  22 catcataataagaatgatcctttgttacgaaatgatagcggtacatggtcatgaaataagggttatctaataaaagggaccatgatttacgtacacaacc 121  Q
    ||||||||||||||||||  || |  | |||||  | ||| |||||||||||||||| | |||| || || |||| || ||||||||||||||| || ||    
T  16920225 catcataataagaatgattattagaaaggaaatagttgcgatacatggtcatgaaatgaaggttttcaaacaaaaaggcccatgatttacgtacgcatcc 16920126  T
Q  122 aaaacgcttgaatgattttataggtaat 149  Q
    ||| ||||| || ||||||| |||||||    
T  16920125 aaatcgcttcaaagattttagaggtaat 16920098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 44142275 - 44142355
Alignment:
Q  50 gaaatgatagcggtacatggtcatgaaataagggttatctaataaaagggaccatgatttacgtacacaaccaaaacgctt 130  Q
    |||||| | |||||||||||||||||||| || ||| || || || | |||||||||||| ||||| || |||||| ||||    
T  44142275 gaaatggttgcggtacatggtcatgaaatgagagttttcaaacaagatggaccatgatttgcgtacgcatccaaaaagctt 44142355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 166
Target Start/End: Complemental strand, 9678 - 9575
Alignment:
Q  63 tacatggtcatgaaataagggttatctaataaaagggaccatgatttacgtacacaaccaaaacgcttgaatgattttataggtaatttggaaagaatag 162  Q
    |||||| ||||||||| |||||| || |||||  | |||||||||||| ||||||||| ||| || || || ||||| | ||| |||||||| ||||| |    
T  9678 tacatgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaatgg 9579  T
Q  163 aaaa 166  Q
    ||||    
T  9578 aaaa 9575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 15632165 - 15632252
Alignment:
Q  26 ataataagaatgatcctttgttacgaaatgatagcggtacatggtcatgaaataagggttatctaataaaagggaccatgatttacgt 113  Q
    |||||||||||| ||||||| || ||||| || ||||| ||| |||||||||| | |||| || ||||| || |||||||| ||||||    
T  15632165 ataataagaatggtcctttgataagaaattattgcggtgcatagtcatgaaatgatggttgtcaaataagagagaccatgacttacgt 15632252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 3368680 - 3368729
Alignment:
Q  71 catgaaataagggttatctaataaaagggaccatgatttacgtacacaac 120  Q
    ||||||||||||||| || ||||| || |||||||||||||| |||||||    
T  3368680 catgaaataagggttttcaaataagagagaccatgatttacgcacacaac 3368729  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 21379306 - 21379404
Alignment:
Q  65 catggtcatgaaataagggttatctaataaaagggaccatgatttacgtacacaaccaaaacgcttgaatgattttataggtaatttggaaagaataga 163  Q
    |||| |||||||||||| ||| || ||||| || |||||||||||||| || || ||||| ||||| || ||||| | |||||| || || ||||||||    
T  21379306 catgttcatgaaataagtgttttcaaataagagagaccatgatttacggacgcatccaaatcgcttcaaagatttaagaggtaacttcgatagaataga 21379404  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 11000092 - 11000039
Alignment:
Q  72 atgaaataagggttatctaataaaagggaccatgatttacgtacacaaccaaaa 125  Q
    |||| ||||||||| || ||||| |||||||||||||||| |||||| ||||||    
T  11000092 atgacataagggttttcaaataagagggaccatgatttacatacacacccaaaa 11000039  T

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Target: scaffold0068 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 15036 - 15064
Alignment:
Q  20 atcatcataataagaatgatcctttgtta 48  Q
    |||||||||||||||||||||||||||||    
T  15036 atcatcataataagaatgatcctttgtta 15064  T

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