View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10131_low_54 (Length: 250)

Name: NF10131_low_54
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10131_low_54
NF10131_low_54
[»] chr5 (8 HSPs)
chr5 (9-240)||(43297118-43297350)
chr5 (9-240)||(26751477-26751709)
chr5 (9-240)||(6555987-6556219)
chr5 (9-240)||(27007342-27007574)
chr5 (9-236)||(42345747-42345974)
chr5 (21-237)||(11821474-11821692)
chr5 (11-209)||(25055064-25055259)
chr5 (9-201)||(13970859-13971049)
[»] chr6 (4 HSPs)
chr6 (9-240)||(29267729-29267961)
chr6 (9-240)||(29231155-29231387)
chr6 (10-223)||(22865375-22865589)
chr6 (9-209)||(31860009-31860210)
[»] chr4 (6 HSPs)
chr4 (9-240)||(32718558-32718790)
chr4 (9-209)||(35430835-35431036)
chr4 (9-240)||(17930364-17930596)
chr4 (9-240)||(1593065-1593297)
chr4 (9-230)||(17498799-17499020)
chr4 (172-240)||(46515171-46515239)
[»] chr3 (10 HSPs)
chr3 (9-240)||(12514602-12514834)
chr3 (9-240)||(2282639-2282870)
chr3 (9-240)||(33942020-33942252)
chr3 (9-240)||(4118368-4118600)
chr3 (9-240)||(40466201-40466433)
chr3 (9-240)||(32428078-32428309)
chr3 (9-206)||(51546102-51546302)
chr3 (9-236)||(10284831-10285059)
chr3 (9-136)||(29773791-29773918)
chr3 (16-209)||(29774080-29774284)
[»] chr7 (12 HSPs)
chr7 (9-240)||(47864299-47864531)
chr7 (9-240)||(45166832-45167064)
chr7 (9-240)||(41152474-41152706)
chr7 (9-209)||(46793610-46793811)
chr7 (9-240)||(25568096-25568328)
chr7 (9-209)||(40441098-40441299)
chr7 (9-112)||(1298490-1298593)
chr7 (9-209)||(43376912-43377092)
chr7 (10-209)||(16795216-16795411)
chr7 (39-209)||(16793614-16793780)
chr7 (9-88)||(8181643-8181722)
chr7 (169-201)||(8181801-8181833)
[»] chr1 (9 HSPs)
chr1 (9-240)||(45474858-45475090)
chr1 (9-240)||(36355082-36355314)
chr1 (9-240)||(28865157-28865389)
chr1 (79-240)||(7405874-7406036)
chr1 (9-209)||(27285339-27285540)
chr1 (9-121)||(48139183-48139295)
chr1 (117-220)||(18884431-18884535)
chr1 (9-73)||(18884356-18884420)
chr1 (9-56)||(7406033-7406080)
[»] scaffold0006 (1 HSPs)
scaffold0006 (9-240)||(26725-26957)
[»] scaffold0325 (1 HSPs)
scaffold0325 (9-240)||(6103-6333)
[»] chr8 (5 HSPs)
chr8 (39-240)||(17441276-17441478)
chr8 (9-240)||(45119987-45120219)
chr8 (2-220)||(23230036-23230256)
chr8 (9-78)||(44322528-44322597)
chr8 (169-209)||(14985440-14985480)
[»] chr2 (2 HSPs)
chr2 (9-240)||(13331160-13331396)
chr2 (19-98)||(28421019-28421098)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 43297350 - 43297118
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  43297350 aaaaagtgtcatatttcatctaagaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaaccggagtgtcatcaaacataa 43297251  T
Q  109 ttggattgtcttcatttgttggtt-ttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43297250 ttggattgtcttcatttgttggtttttttggtggaaccggtctctctttgtcctcaatctccatgagtgcttggaaacgatcgtgttgatccaagaattc 43297151  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||| ||||||||||||||||||||||||||    
T  43297150 ataatcccatgtttttgcctcatcactcctatg 43297118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 26751709 - 26751477
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||    
T  26751709 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttaaaattcttcgtttcctttaaccggagtgtcatcaaacataa 26751610  T
Q  109 ttggattgtcttcatttgttggtt-ttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26751609 ttggattgtcttcatttgttggtttttttggtggaactggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 26751510  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||| ||||||||||||||||| ||||||||    
T  26751509 ataatcccatgtttttgcctcatcgctcctatg 26751477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 6556219 - 6555987
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  6556219 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccataacatcttcaaattcttcgtttcctttaaccggagtgtcatgaaacataa 6556120  T
Q  109 ttggattgtcttcatttgttggtt-ttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  6556119 ttggattgtcttcatttgttggtttttttggtggaatcggtctctctttgtcttcaatctccatgagtgctcggaaacgatcgtgttaatccaagaattc 6556020  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||||||||||||||||||||| ||||||||    
T  6556019 ataatctcatgtttttgcctcatcgctcctatg 6555987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 27007342 - 27007574
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||   |||| |||||||  ||||||||||||||||||    
T  27007342 aaaaagtgtcatatttcatataataaaaacaaatcatctaaatgttccagaacatcttcaaattcggtgtttgctttaaccggagtgtcatcaaacataa 27007441  T
Q  109 ttggattgtcttcatttgttgg-ttttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27007442 tgggattgtcttcatttgttgggttttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcgaaaacgatcgtgttgatccaagaattc 27007541  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||| ||||||||||||||||| ||||||||    
T  27007542 ataatcccatgtttttgcctcatcgctcctatg 27007574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 42345974 - 42345747
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||   |||| |||||||  ||||||||||||||||||    
T  42345974 aaaaagtgtcatatttcatctaataaaagcaaatcatctaaatgttccagaatatcttcaaattcggtgtttgctttaaccggagtgtcatcaaacataa 42345875  T
Q  109 ttggattgtcttcatttgttggttttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattca 208  Q
    |||||||||||| ||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42345874 ttggattgtcttgatttgttggtttttttgtggaaccgatgtctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattca 42345775  T
Q  209 taatctcatgtttttgcctcatcactcc 236  Q
    ||||| ||||||||||||||||| ||||    
T  42345774 taatcccatgtttttgcctcatcgctcc 42345747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 11821692 - 11821474
Alignment:
Q  21 atttcatctaacaaaagcaaatcatctaaatgttccagaacatcttca-aattcttcgtttcctttaacttgagtgtcatcaaacataattggattgtct 119  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||  | |||| |||||||  |||||||||||| |||||| ||||||| |    
T  11821692 atttcatctaataaaagcaaatcatctaaatgttccagaacatcttcacaattggt-gtttgctttaaccggagtgtcatcaagcataataggattgt-t 11821595  T
Q  120 tcatttgttggttt-tttggtggaacc--ggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattcataatctca 216  Q
    | |||||||||||| |||||||||| |  |||||||||||   ||| || || ||||| | || |||||||||||||||||||||||||||||  |||||    
T  11821594 tgatttgttggtttctttggtggaatcggggtctctcttttagctctatgtctatgagcgttcagaaacgatcgtgttgatccaagaattcatcctctca 11821495  T
Q  217 tgtttttgcctcatcactcct 237  Q
    ||||   ||||| ||||||||    
T  11821494 tgttgccgcctcttcactcct 11821474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 25055259 - 25055064
Alignment:
Q  11 aaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataatt 110  Q
    |||||||||||||||||||||  |||  ||||||| ||||||||  | |||||||||||||||||| ||| |||||||  |||||   ||| ||| |||     
T  25055259 aaagtgtcatatttcatctaatgaaattaaatcatttaaatgtttaacaacatcttcaaattcttcattttctttaaccggagtg---tcacacaaaata 25055163  T
Q  111 ggattgtcttcatttgttggtttttt-ggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattcat 209  Q
    ||||||| || |||||||  |||||| |||| ||||||||||||||  | | ||||||||| ||||  || ||||||||||||||||||||| |||||||    
T  25055162 ggattgtgttgatttgtttcttttttgggtgaaaccggtctctcttgtttcacaatctccacgagt-ttcagaaacgatcgtgttgatccaaaaattcat 25055064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 13971049 - 13970859
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||||| |||||||  |||  ||||||||||||||||||| || |||||| ||||||||  || |||||||  |||||   ||| ||| ||    
T  13971049 aaaaagtgtcatattccatctaatgaaattaaatcatctaaatgttccacaagatcttcgaattcttcagttgctttaaccagagtg---tcacacaaaa 13970953  T
Q  109 ttggattgtcttcatttgttggtttttt-ggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaa 201  Q
    | ||||||| || |||||||  |||||| |||| |||| ||||||||   | |||||| | |||||||| ||| ||||||||||||||||||||    
T  13970952 taggattgtgttgatttgtttcttttttgggtgaaaccagtctctctcctttctcaatgttcatgagtgttcgaaaacgatcgtgttgatccaa 13970859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 29267961 - 29267729
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  29267961 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgttttctttaactggagtgtcatcaaacataa 29267862  T
Q  109 ttggattgtcttcatttgttggtt-ttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29267861 ttggattgtcttcatttgttggttcttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcagaaacgatcgtgttgatccaagaattc 29267762  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||| ||| ||||||||||||| ||||||||    
T  29267761 ataatcccatatttttgcctcatcgctcctatg 29267729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 29231155 - 29231387
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||    
T  29231155 aaaaagtgtcatatttcatctaacaaaagcaaataatctaaatgttccagaacatcttcaaattcttcattttctttaactggagtgtcatcaaacataa 29231254  T
Q  109 ttggattgtcttcatttgttggtt-ttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29231255 ttggattgtcttcatttgttggttcttttggtggaatcggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 29231354  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||| ||||||||||||||||| ||||||||    
T  29231355 ataatcccatgtttttgcctcatcgctcctatg 29231387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 22865589 - 22865375
Alignment:
Q  10 aaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataat 109  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||||||||   ||||||||||||||||||    
T  22865589 aaaagtgtcatatttcatctaacaaaagcaaatcatttaaatgttctataacatcttcaaatttttcgtttcctttaaccgtagtgtcatcaaacataat 22865490  T
Q  110 tggattgtcttcatttgttggtt-ttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattca 208  Q
    ||||||||||| | ||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22865489 tggattgtctttagttgttggtttttttggtggaaccgatctctctttgtcatcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattca 22865390  T
Q  209 taatctcatgttttt 223  Q
    ||||| |||||||||    
T  22865389 taatcccatgttttt 22865375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 31860210 - 31860009
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||   |||| |||||||  ||||||||||||||||||    
T  31860210 aaaaagtgtcatatttcatctaataaaataaaatcatctaaatgttccagaacatcttcaaattcggtgtttgctttaaccggagtgtcatcaaacataa 31860111  T
Q  109 ttggattgtcttcatttg-ttggttttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||||| ||   |||||| |||||||||| ||||||||||||||||||||| || |||||    
T  31860110 ttggattgtcttgatttgtttgtttttttggtggaaccggtctctcatttagctcaatgtccatgagtgttcggaaacgatcgtgttgatcaaataattc 31860011  T
Q  208 at 209  Q
    ||    
T  31860010 at 31860009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 32718790 - 32718558
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32718790 aaaaaatgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaactggagtgtcatcaaacataa 32718691  T
Q  109 ttggattgtcttcatttgttggtt-ttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32718690 ttggattgtcttcatttgttggtttttttggtggaacgggtctctctttgtcctcaatctccacgagtgctcggaaacgatcgtgttgatccaagaattc 32718591  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||| ||||||||||||||||| ||||||||    
T  32718590 ataatcccatgtttttgcctcatcgctcctatg 32718558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 35431036 - 35430835
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  35431036 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgttttctttaaccggagtgtcatcaaacataa 35430937  T
Q  109 ttggattgtcttcatttgttggtt-ttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  35430936 ttggattgtcttcatttgttggtttttttggtggaaccggactctctttgtcctcaatctccgggagtgctcggaaacgatcgtgttgatccaagaattc 35430837  T
Q  208 at 209  Q
    ||    
T  35430836 at 35430835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 17930596 - 17930364
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   |||| |||||||  ||||||| ||||||||||    
T  17930596 aaaaagtgtcatatttcatctaataaaagcaaatcatctaaatgttccagaacatcttcaaattcggtgtttgctttaaccggagtgtcgtcaaacataa 17930497  T
Q  109 ttggattgtcttcatttgttggtt-ttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  17930496 ttggattgtctttatttgttggtttttttgatggaaccggtctctctttgtcctcaatctccatgagtactcggaaacaatcgtgttgatccaagaattc 17930397  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    ||||||||||| |||||||||||| ||||||||    
T  17930396 ataatctcatggttttgcctcatcgctcctatg 17930364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 1593297 - 1593065
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |   |||| |||||||  ||||||||||||||||||    
T  1593297 aaaaagtgtcatatttcatctaataaaagcaaatcatctaaatgttctagaacatcttcaaatacggtgtttgctttaaccggagtgtcatcaaacataa 1593198  T
Q  109 ttggattgtcttcatttgttgg-ttttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  1593197 ttggattgtcttcatttattggtttttttggtggaaccggtctctctttgtcctcaatctccatgggtgctcgaaaacgatcgtgttgatccaagaattc 1593098  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||| ||||||||||| ||||| ||| ||||    
T  1593097 ataatcccatgtttttgcttcatcgctcttatg 1593065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 17499020 - 17498799
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||||||||||||| ||||  |||| || ||||||||||||||||||||||||||||| |||| |||||||   |||||||||||||||||    
T  17499020 aaaaagtgtcatatttcatctaataaaaataaattatttaaatgttccagaacatcttcaaattctttgtttgctttaaccgcagtgtcatcaaacataa 17498921  T
Q  109 ttggattgtcttcatttgttggttttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattca 208  Q
    | | |||||||| ||||||||||||||||||| |||||||||||||||   |||||||||||||||||  || ||||||||||| ||||| |||||||||    
T  17498920 tagaattgtcttgatttgttggttttttggtgaaaccggtctctcttttagctcaatctccatgagtgtacgaaaacgatcgtgatgatctaagaattca 17498821  T
Q  209 taatctcatgtttttgcctcat 230  Q
    |  || |||||| | |||||||    
T  17498820 tcctcccatgttgtcgcctcat 17498799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 46515171 - 46515239
Alignment:
Q  172 gagtgctcggaaacgatcgtgttgatccaagaattcataatctcatgtttttgcctcatcactcctatg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  46515171 gagtgctcggaaacgatcgtgttgatccaagaattcataatccaatgtttttgcctcatcgctcctatg 46515239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 12514834 - 12514602
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||||||||    
T  12514834 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgttttctttaatcggagtgtcatcaaacataa 12514735  T
Q  109 ttggattgtcttcatttgttggtt-ttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12514734 ttggattgtcttcatttgttggttcttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 12514635  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    ||||| |||||||||||||||||| ||||||||    
T  12514634 ataatttcatgtttttgcctcatcgctcctatg 12514602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 2282639 - 2282870
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  2282639 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgttttctttaaccggagtgtcatcaaacataa 2282738  T
Q  109 ttggattgtcttcatttgttggtt-ttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2282739 ttggattgtcttcatttgttggttcttttggtggaaccggtctctc-ttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 2282837  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||| ||||||||||||||||| ||||||||    
T  2282838 ataatcccatgtttttgcctcatcgctcctatg 2282870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 33942252 - 33942020
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  || ||||||||||||||     
T  33942252 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttctagaacatcttcaaattcttcgtttcctttaaccggaatgtcatcaaacatag 33942153  T
Q  109 ttggattgtcttcatttgttggtt-ttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33942152 ttggattgtcttcatttgttggtttttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattc 33942053  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||||||||||||||||||||| ||||||||    
T  33942052 ataatctcatgtttttgcctcatcgctcctatg 33942020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 4118368 - 4118600
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  4118368 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgttttctttaaccggagtgtcatcaaacataa 4118467  T
Q  109 ttggattgtcttcatttgttggtttttt-ggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  4118468 ttggattgtctttatttgttggttttttaggtggaaccggtctctctttgtccttaatctccatgagtgctcgcaaacgatcgtgttgatccaagaattc 4118567  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||| ||||||||||||||||| ||||||||    
T  4118568 ataatcccatgtttttgcctcatcgctcctatg 4118600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 40466201 - 40466433
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||   |||| |||||||  ||||||||||||||||||    
T  40466201 aaaaagtgtcatatttcatctaataaaatcaaatcatctaaatgttccagaacatcttcaaattcggtgtttgctttaaccggagtgtcatcaaacataa 40466300  T
Q  109 ttggattgtcttcatttgttggtttttt-ggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40466301 ttggattgtctttatttgttggtttttttggtgtaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 40466400  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    ||||||||||||||||| ||||||  |||||||    
T  40466401 ataatctcatgtttttgtctcatcgttcctatg 40466433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 32428309 - 32428078
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| || |||||||| |||  ||||||||||||||||||    
T  32428309 aaaaagtgtcatatttcatctaacaaaagcaaaacatctaaatgttccaggacatcttcaaattttttgtttcctt-aaccggagtgtcatcaaacataa 32428211  T
Q  109 ttggattgtcttcatttgttggtttttt-ggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||    
T  32428210 ttggattgtcttcatttgttggtttttttggtggaaccggtctctctttgtcctcaatctccatgaatgctcggaaacgatcgtgctgatccaataattc 32428111  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||| ||||||||||| ||||| ||||||||    
T  32428110 ataatcccatgtttttgcttcatcgctcctatg 32428078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 51546102 - 51546302
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  51546102 aaaaagtgtcatatttcatctaacaaaaacaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaaccggagtgtcatcaaacataa 51546201  T
Q  109 ttggattgtcttcatttgttgg---ttttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaat 205  Q
    ||||||||||||||||||||||   |||||| |||||||||||||||||||   |||||| |||||||||| ||||||||||||||||||||||||||||    
T  51546202 ttggattgtcttcatttgttggttttttttttgtggaaccggtctctcttttagctcaatgtccatgagtgttcggaaacgatcgtgttgatccaagaat 51546301  T
Q  206 t 206  Q
    |    
T  51546302 t 51546302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 10284831 - 10285059
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||||| |||||||  ||||||   |||| |||||||  ||||||||||||||||||    
T  10284831 aaaatgtgtcatatttcatctaataaaagcaaataatctaaatgttccaaaacatctaaaaattcggtgtttgctttaaccggagtgtcatcaaacataa 10284930  T
Q  109 ttggattgtcttcatttgttgg-ttttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||||||||||||| ||||||| |||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  10284931 ttggattgtcttcatttgttggtttttttgttggaaccattctctctttgtcctcaatctccatgagtgctcggaaacaatcgtgttgatccaagaattt 10285030  T
Q  208 ataatctcatgtttttgcctcatcactcc 236  Q
    |||||| ||||||||||||||||| ||||    
T  10285031 ataatcccatgtttttgcctcatcgctcc 10285059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 29773791 - 29773918
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||   ||||||||||||||||||    
T  29773791 aaaaagtgtcatatttcatctaataaaagtaaatcatctaaatgttccagaacatcttcaaattcttcatttcctttaatcggagtgtcatcaaacataa 29773890  T
Q  109 ttggattgtcttcatttgttggtttttt 136  Q
    | | |||||||| |||||||| ||||||    
T  29773891 tagtattgtcttgatttgttgttttttt 29773918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 29774080 - 29774284
Alignment:
Q  16 gtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataattggatt 115  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||   ||||||||||||||||||| || ||    
T  29774080 gtcatatttcatctaataaaagtaaatcatctaaatgttccagaacatcttcaaattcttcatttcctttaatcggagtgtcatcaaacataataggttt 29774179  T
Q  116 g-----------tcttcatttgttggttttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaa 204  Q
    |           | ||  ||| ||  |||||| ||  ||||| |||||||||   ||||||||||||||||| ||| |||||||||||||||||||||||    
T  29774180 ggtttgattttttttttttttttttttttttttgtaaaaccgatctctcttttagctcaatctccatgagtgttcgaaaacgatcgtgttgatccaagaa 29774279  T
Q  205 ttcat 209  Q
    |||||    
T  29774280 ttcat 29774284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 47864299 - 47864531
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  47864299 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaaccggagtgtcatcaaatataa 47864398  T
Q  109 ttggattgtcttcatttgttgg-ttttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47864399 ttggattgtcttcatttgttggtttttttggtggaaccggtttctctttgtcctcaatctccatgagtgctcggaaacgatcgtgtggatccaagaattc 47864498  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||| ||||||||||||||||| ||||||||    
T  47864499 ataatcccatgtttttgcctcatcgctcctatg 47864531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 45166832 - 45167064
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||  ||||||||||||||||||    
T  45166832 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcattttctttaaccggagtgtcatcaaacataa 45166931  T
Q  109 ttggattgtcttcatttgttggtt-ttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  45166932 ttggattgtcttcatttgttggttcttttggtggaaccggtctctctttgtcctcaatctccatgagtactcagaaacgatcgtgttgatccaagaattc 45167031  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||| ||||||||||||||||| ||||||||    
T  45167032 ataatcccatgtttttgcctcatcgctcctatg 45167064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 41152706 - 41152474
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||| | |||||||||    
T  41152706 aaaaagtgtcatatttcatataacaaaagcaaatcatctaaatgttccggaacatcttcaaattcttcgtttcctttaaccggagtgtgaacaaacataa 41152607  T
Q  109 ttggattgtcttcatttgttggtt-ttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41152606 ttggattgtcttcatttgttggtttttttggtggaaccggtctctctttatcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 41152507  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    ||||||||||| ||||||| |||| ||||||||    
T  41152506 ataatctcatgcttttgccccatcgctcctatg 41152474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 46793811 - 46793610
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||    
T  46793811 aaaaagtgtcataattcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaaccggtgtgtcatcaaacataa 46793712  T
Q  109 ttggattgtcttcatttgttggtt-ttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    ||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46793711 ttgaattgtcttcatttgttggtttttttggtggaaccggtctctttttgtcctcaatctccatgagtgctcgaaaacgatcgtgttgatccaagaattc 46793612  T
Q  208 at 209  Q
    ||    
T  46793611 at 46793610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 25568096 - 25568328
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||| ||| | |  ||||||  ||||||||||||||||||    
T  25568096 aaaaagtgtcatatttcatctaacaaaagcaaatcatccaaatgttctataacatcttcaaatttttcatattttttaaccggagtgtcatcaaacataa 25568195  T
Q  109 ttggattgtcttcatttgttggttt-tttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25568196 ttggattgtcttcatttgtttgtttatttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatcaaagaattc 25568295  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||| ||||| ||||||||||| ||||||||    
T  25568296 ataatcccatgtatttgcctcatcgctcctatg 25568328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 40441098 - 40441299
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||  ||||||||||||||||||    
T  40441098 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccataacttcttcaaattcttcgttttctttaaccggagtgtcatcaaacataa 40441197  T
Q  109 ttggattgtcttcatttgttgg-ttttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    ||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40441198 ttgaattgtcttcatttgttggtttttttggtggaactggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattc 40441297  T
Q  208 at 209  Q
    ||    
T  40441298 at 40441299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 1298593 - 1298490
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  1298593 aaaatgtgtcatatttcatctaacaaaaacaaatcatctaaatgttccagaacatcttcaaattctccgtttcctttaaccggagtgtcatcaaacataa 1298494  T
Q  109 ttgg 112  Q
    ||||    
T  1298493 ttgg 1298490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 43376912 - 43377092
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| || | |||| |||||||  ||||||||| |           
T  43376912 aaaaagtgtcatatttcatctaataaaagcaaatcatataaatgttccagaacatcttcaaactcgttgtttgctttaaccggagtgtcatga------- 43377004  T
Q  109 ttggattgtcttcatttgttgg-ttttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
                  |||||||| ||||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||||||||||||| |||    
T  43377005 --------------tttgttggcttttttggtggaaccggtctctcttttagctcaatgtccatgagtgctcggaaacgatcgtgttgatccaagatttc 43377090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 16795216 - 16795411
Alignment:
Q  10 aaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataat 109  Q
    |||||||||||||||||||||   |||  ||||||||||||||||||| |     |||||||||||| ||| |||||||  |||||||  || ||| |||    
T  16795216 aaaagtgtcatatttcatctattgaaattaaatcatctaaatgttccaca-----ttcaaattcttcatttgctttaaccggagtgtctccacacaaaat 16795310  T
Q  110 tggattgtcttcatttgttggt-tttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattca 208  Q
     |||||||||| |||||||||| ||||||||| ||||||||| | |   | ||||||||| ||||||| | ||||||| | |||||||||||| ||||||    
T  16795311 aggattgtcttgatttgttggtatttttggtgtaaccggtctatttcctttctcaatctctatgagtgtttggaaacggttgtgttgatccaaaaattca 16795410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 209
Target Start/End: Original strand, 16793614 - 16793780
Alignment:
Q  39 aaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataattggattgtcttcatttgttggttttttgg 138  Q
    ||||||||||||||||||| |     |||||||||||| ||| |||||||   ||||||  || | | ||| |||||||| | ||||||||| |||||||    
T  16793614 aaatcatctaaatgttccaca-----ttcaaattcttcatttgctttaaccgaagtgtctccacaaaaaataggattgtcatgatttgttggatttttgg 16793708  T
Q  139 -tggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattcat 209  Q
     |||||||  |||||||   | ||||||||  |||| || |||||||||||||||||||||||| |||||||    
T  16793709 gtggaaccaatctctctcctttctcaatctatatgattgttcggaaacgatcgtgttgatccaaaaattcat 16793780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 8181643 - 8181722
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaac 88  Q
    |||||| ||||||||||| | ||  |||  ||||||||||||||||||| || |||||| |||||||| ||| |||||||    
T  8181643 aaaaagagtcatatttcaccaaatgaaattaaatcatctaaatgttccacaagatcttcgaattcttcattttctttaac 8181722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 8181801 - 8181833
Alignment:
Q  169 catgagtgctcggaaacgatcgtgttgatccaa 201  Q
    |||||||| ||||||||||||||||||||||||    
T  8181801 catgagtgttcggaaacgatcgtgttgatccaa 8181833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 45475090 - 45474858
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  45475090 aaaaagtgtcatatttcatctaacaaaaacaaatcatctaaatgttccagaacatcttcaaattcttcgttttctttaaccggagtgtcatcaaacataa 45474991  T
Q  109 ttggattgtcttcatttgttggtt-ttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    || ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  45474990 tttgattgtcttcatttgttggtttttttggtggaaccgatctctctttgtcctcaatctccatgagtgctcggaaatgatcgtgttgatccaagaattc 45474891  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||| ||||||||||||||||| ||||||||    
T  45474890 ataatcccatgtttttgcctcatcgctcctatg 45474858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 36355082 - 36355314
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    |||| |||||||  ||||||||||||||||||    
T  36355082 aaaaagtttcatatttcatctaataaaagcaaatcatctaaatgttccagaacatcttcaaatttggtgtttgctttaaccggagtgtcatcaaacataa 36355181  T
Q  109 ttggattgtcttcatttgttggtttt-ttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36355182 ttggattgtcttgatttgttggtttttttggtggaaccggtctctgtttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 36355281  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||| ||||||||||||||||| ||||||||    
T  36355282 ataatcccatgtttttgcctcatcgctcctatg 36355314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 28865389 - 28865157
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||   |||| |||||||   ||| |||||||||||||    
T  28865389 aaaaagtgtcatatttcatctaattaaaacaaatcatctaaatgttccagaacatcttcaaattcggtgtttgctttaaccgaagtatcatcaaacataa 28865290  T
Q  109 ttggattgtcttcatttgttggtttttt-ggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28865289 ttggattgtcttgatttgttggtttttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcgaaaacgatcgtgttgatccaagaattc 28865190  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||| ||||||||||||||||||| ||||||||    
T  28865189 ataaactcatgtttttgcctcatcgctcctatg 28865157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 79 - 240
Target Start/End: Complemental strand, 7406036 - 7405874
Alignment:
Q  79 ttcctttaacttgagtgtcatcaaacataattggattgtcttcatttgttggtttttt-ggtggaaccggtctctctttgtcctcaatctccatgagtgc 177  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  7406036 ttcctttaaccggagtgtcatcaaacataattggattgtcttcatttgttggtttttttggtggaactggtctctctttgtcctcaatctccatgagtgc 7405937  T
Q  178 tcggaaacgatcgtgttgatccaagaattcataatctcatgtttttgcctcatcactcctatg 240  Q
    | ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7405936 ttggaaacgctcgtgttgatccaagaattcataatcccatgtttttgcctcatcactcctatg 7405874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 27285540 - 27285339
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    |||||||||||||||||||| ||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  27285540 aaaaagtgtcatatttcatcaaatgaaagtaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaaccggagtgtcatcaaacataa 27285441  T
Q  109 ttggattgtcttcatttgttggtt-ttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    | |||||||||| ||||||||||| ||||||   |||||||||||||||   ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  27285440 taggattgtcttgatttgttggtttttttgggaaaaccggtctctcttttagctcaatctccatgagtgttcgaaaacgatcgtgttgatccaagaattc 27285341  T
Q  208 at 209  Q
    ||    
T  27285340 at 27285339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 48139183 - 48139295
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||  ||||||||||||||||||    
T  48139183 aaaaagtgtcatatttcatctaacaaaatcaaatcatctaaatgttccagaacattttcaaattcttcgttttctttaaccggagtgtcatcaaacataa 48139282  T
Q  109 ttggattgtcttc 121  Q
    || ||||||||||    
T  48139283 ttagattgtcttc 48139295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 18884431 - 18884535
Alignment:
Q  117 tcttcatttgttggtttt-ttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattcataatctc 215  Q
    |||| ||||||||||||| |||||||||||||| |||||||   ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| |    
T  18884431 tcttgatttgttggtttttttggtggaaccggtttctcttttagctcaatctccatgagtgttcggaaacgatcatgttgatccaagaattcatgatccc 18884530  T
Q  216 atgtt 220  Q
    |||||    
T  18884531 atgtt 18884535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 18884356 - 18884420
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattc 73  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  18884356 aaaaagtgtcatatttcatctaataaaagtaaatcatctaaatgttccagaacatcttcaaattc 18884420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 7406080 - 7406033
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttcc 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7406080 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttcc 7406033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 26725 - 26957
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||| |||    
T  26725 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcatttcctttaactggagtgtgatcaaacgtaa 26824  T
Q  109 ttggattgtcttcatttgttgg-ttttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||    
T  26825 ttggattgtcttcatttgttggtttttttggtggaaccggtctctctttgtcatcaatatcaatgagtgctcgaaaacgatcgtgttgatccaagaattc 26924  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||| ||||||||||||||||| ||||||||    
T  26925 ataatcccatgtttttgcctcatcgctcctatg 26957  T

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Target: scaffold0325 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 6333 - 6103
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||   |||| |||||||  ||||||||||||||||||    
T  6333 aaaaagtgtcatatttcatctaataaaagcaaatcatctaaatgttccagaacttcttcaaattcggtgtttgctttaaccggagtgtcatcaaacataa 6234  T
Q  109 ttggattgtcttcatttgttggtttttt-ggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    ||||||||||  |||||||||||||||| |||| |||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  6233 ttggattgtc--catttgttggtttttttggtgcaaccggtctctctttgtccaaaatctccatgagtgcccggaaacgatcgtgttgatccaagaattc 6136  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||| ||||||||||||||||||||||||||    
T  6135 ataatcccatgtttttgcctcatcactcctatg 6103  T

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Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 39 - 240
Target Start/End: Complemental strand, 17441478 - 17441276
Alignment:
Q  39 aaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataattggattgtcttcatttgttggttt-tttg 137  Q
    |||||||||||||||||||||||||||||||||||   |||| |||||||  |||||||||||||||||||||||||||||| |||||||||||| ||||    
T  17441478 aaatcatctaaatgttccagaacatcttcaaattcggtgtttgctttaaccggagtgtcatcaaacataattggattgtcttgatttgttggtttgtttg 17441379  T
Q  138 gtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattcataatctcatgtttttgcctcatcactcct 237  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  17441378 gtggaaccggtctctctttgtcctcaatctccatgagtgctcagaaacgatcgtgttgattcaagaattcataatcccatgtttttgcctcatcgctcct 17441279  T
Q  238 atg 240  Q
    |||    
T  17441278 atg 17441276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 45120219 - 45119987
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||   |||| |||||||  ||||||||| ||||||||    
T  45120219 aaaaagtgttatatttcatctaataaaagcaaatcatctaaatgttctagaacatcttcaaattcggtgtttgctttaaccggagtgtcattaaacataa 45120120  T
Q  109 ttggattgtcttcatttgttggtttttt-ggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattc 207  Q
    ||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  45120119 ttggattctcttgatttgttggtttttttggtggaaccggtctctctttgtcctcaatctccatgagtgttcggaaacgatcgtgttgatctaagaattc 45120020  T
Q  208 ataatctcatgtttttgcctcatcactcctatg 240  Q
    || | | ||||||||||||||||| || |||||    
T  45120019 attagcccatgtttttgcctcatcgcttctatg 45119987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 23230256 - 23230036
Alignment:
Q  2 accaactaaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatca 101  Q
    ||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||   |||| |||||||  ||||||||| |    
T  23230256 accaaataaaaagtgtcatatttcatctaataaaagtaaatcatctaaatgttccagaacatcttcaaattcggtgtttgctttaacgggagtgtcatta 23230157  T
Q  102 aacataattggattgtcttcatttgttggtt--ttttggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatcc 199  Q
    |||||||||||||| |||| |||||||||||  ||||| |||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||    
T  23230156 aacataattggattttcttgatttgttggttttttttgttggaaccggtctctctttgtcctcaatctccatgagtgttcgaaagcgatcgtgttgatcc 23230057  T
Q  200 aagaattcataatctcatgtt 220  Q
    |||||||||| ||| ||||||    
T  23230056 aagaattcatgatcccatgtt 23230036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 44322597 - 44322528
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgt 78  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44322597 aaaaagtatcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgt 44322528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 14985440 - 14985480
Alignment:
Q  169 catgagtgctcggaaacgatcgtgttgatccaagaattcat 209  Q
    |||||||| |||||||||||| ||||||||||| |||||||    
T  14985440 catgagtgttcggaaacgatcatgttgatccaaaaattcat 14985480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 13331396 - 13331160
Alignment:
Q  9 aaaaagtgtcatatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtcatcaaacataa 108  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||||| |||||||||||| ||   |||| |||||||  ||||||||| ||||||||    
T  13331396 aaaaagtgtcatatttcatctaataaaagcaaatggtctaaatgttccataacatcttcaaaatcggtgtttgctttaaccggagtgtcattaaacataa 13331297  T
Q  109 ttggattgtcttcatttgttggttttttg-----gtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgtgttgatccaaga 203  Q
    |||||||||||| |||||||| ||||||      |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  13331296 ttggattgtcttgatttgttgattttttttttttgtggaaccggtctctctttgtcctcaatctccataagtgctcgaaaacgatcgtgttgatccaaga 13331197  T
Q  204 attcataatctcatgtttttgcctcatcactcctatg 240  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  13331196 attcataatcccatgtttttgcctcatcgctcctatg 13331160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 28421019 - 28421098
Alignment:
Q  19 atatttcatctaacaaaagcaaatcatctaaatgttccagaacatcttcaaattcttcgtttcctttaacttgagtgtca 98  Q
    |||||||||||||  |||  ||||||||||||||||||| || |||||| |||||||| ||| |||||||  ||||||||    
T  28421019 atatttcatctaatgaaattaaatcatctaaatgttccacaagatcttcgaattcttcatttgctttaaccggagtgtca 28421098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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