View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_57 (Length: 250)
Name: NF10131_low_57
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 6 - 244
Target Start/End: Complemental strand, 24242359 - 24242126
Alignment:
| Q |
6 |
atactttacattttacaagttgattttataaaaatgaattagactctatgattatgatacacgagtataagttacgactaatttaaaaaatcaatacacg |
105 |
Q |
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| T |
24242359 |
atactttacattttacaagttgattttataaaaatgaattagactctatgat------acacgagtacaagttacgattaatttaaaaaatcaatacacg |
24242266 |
T |
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| Q |
106 |
agaaaacctcaaatttcactcgcaactaagcaa-gaggaaacttggagtatcacacaagtattgaatacctagtacctggtacatgtacttcaccttttt |
204 |
Q |
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| T |
24242265 |
attaaacctcaaatttcactcgcaactaagcaatgaggaaacttggagtatcacacaagtattgaatacctagtacctggtacaagtacttcaccttttt |
24242166 |
T |
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| Q |
205 |
acaaatggaaaatgctacttttcatgaaaattcttctcac |
244 |
Q |
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| T |
24242165 |
acaaatggaaaatgctacttatcatgaaaattcttttcac |
24242126 |
T |
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