View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_58 (Length: 250)
Name: NF10131_low_58
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 26282307 - 26282074
Alignment:
| Q |
5 |
caaacacattaaatcgtccccacatgcaaaataatttggtctgtttggt----actacaagatattattgcataaaa-ccatgataaacaagttaaggtg |
99 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
26282307 |
caaacacattaaatcgttcccacatgcaaaataatttggtctgtttggttggtactacaagatatcattgcataaaaaccatgataaacaagttaaggtg |
26282208 |
T |
|
| Q |
100 |
acaaacctccgtactaatttaactggttgcttacccaccatgaattgttacatcttcttgtttcttagcttactcattggattttggctttatatataac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26282207 |
acaaacctccgtactaatttaactggttgcttacccaccatgaattgttacatcttcttgtttcttagcttactcattggattttggctttatatataac |
26282108 |
T |
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| Q |
200 |
ctgacatccattgtcacatacatgatgataaagt |
233 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
26282107 |
ctgacatccattgtcacatacatgatgataaagt |
26282074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 26279074 - 26278837
Alignment:
| Q |
1 |
aaagcaaacacattaaatcgtccccacatgcaaaataatttggtctgtttggt----actacaagatattattgcataaaa-ccatgataaacaagttaa |
95 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
26279074 |
aaagcaaacacattacatcgtccccacatgcaaaataatttgatctgtttggttggtactacaagatatcattgcataaaaaccatgataaacaagttaa |
26278975 |
T |
|
| Q |
96 |
ggtgacaaacctccgtactaatttaactggttgcttacccaccatgaattgttacatcttcttgtttcttagcttactcattggattttggctttatata |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26278974 |
ggtgacaaacctccgtactaatttaactggttgcttacccaccatgaattgttacatcttcttgtttcttagcttactcattggattttggctttatata |
26278875 |
T |
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| Q |
196 |
taacctgacatccattgtcacatacatgatgataaagt |
233 |
Q |
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|||||||||||||||||||||||| |||||||||||| |
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| T |
26278874 |
taacctgacatccattgtcacatatgtgatgataaagt |
26278837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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