View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10131_low_59 (Length: 247)
Name: NF10131_low_59
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_59 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 8044239 - 8044057
Alignment:
| Q |
1 |
aattatcgtcaaaataacatcgtggtgtagctgacgcacattgctaatcaattagagctataatctattgtattactgcataacagaaaaacagatttga |
100 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8044239 |
aattatcgtcagaataacatcatggtgtagctgacgcacattgctaatcaattagagctataatctattgtattactgcataacagaaaaacagat---- |
8044144 |
T |
|
| Q |
101 |
gttgacctacttgatttgcagaattgatctcaattatttctaactggtatggatttaaatgactagaatttgaacttgccctacctat |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8044143 |
-ttgacctacttgatttgcagaattgatctcaattatttctaactggtatggatttaaatgactagaatttgaacttgccctacctat |
8044057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 157
Target Start/End: Original strand, 7969409 - 7969555
Alignment:
| Q |
6 |
tcgtcaaaataacatcgtggtgtagctgacgcacattgctaatcaattagagctataatctattgtattactgcataacagaaaaacagatttgagttga |
105 |
Q |
| |
|
|||||||||||| || ||||||||||||| | || |||||| |||||| |||||||||||||| ||||| ||||| ||| || ||| |||||| |
|
|
| T |
7969409 |
tcgtcaaaataatatagtggtgtagctgatgttcaatgctaaccaattaaagctataatctattctattagtgcatgacaaaactacatatttga----- |
7969503 |
T |
|
| Q |
106 |
cctacttgatttgcagaattgatctcaattatttctaactggtatggattta |
157 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7969504 |
cgtacttgatttgcagaattgatctcaattattcctaactggtatggattta |
7969555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 8034335 - 8034283
Alignment:
| Q |
106 |
cctacttgatttgcagaattgatctcaattatttctaactggtatggatttaa |
158 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8034335 |
cctatttgatttgcagaattgatctcaattattcctaactggtatggatttaa |
8034283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 8044273 - 8044240
Alignment:
| Q |
1 |
aattatcgtcaaaataacatcgtggtgtagctga |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
8044273 |
aattatcgtcaaaataacatcgtggtgtagctga |
8044240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 8034440 - 8034382
Alignment:
| Q |
1 |
aattatcgtcaaaataacatcgtggtgtagctgacgcacattgctaatcaattagagct |
59 |
Q |
| |
|
|||| |||||||||||| || |||||||| |||||||| |||||||||||||||||| |
|
|
| T |
8034440 |
aattgtcgtcaaaataatatactggtgtagtcgacgcacaatgctaatcaattagagct |
8034382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University