View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_6 (Length: 586)
Name: NF10131_low_6
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 42 - 576
Target Start/End: Original strand, 4315951 - 4316480
Alignment:
| Q |
42 |
ccaatattaaaatagtataaatctctagttagctgcaacattcaaaatgcctaatgtgttttataagatacaaaaataacgcttaagcccaagataaaat |
141 |
Q |
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| T |
4315951 |
ccaatattaaaatagtat----ctctagttagctgcaatattcaaaatgcctaatgtgttttataagatacaaaaataacgcttaagccgaagataaaat |
4316046 |
T |
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| Q |
142 |
ttcatcgatagaaaacaattaaattcaagtggttaatgagcttcatcaaataagaatcgtatttatctcacgatcgaactccggattacctggacctctt |
241 |
Q |
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| T |
4316047 |
ttcattgataaaaaataattaaattcaagtggttaatgagcttcatcaaataagaatcgtatttacttcacgatcgaactccggattaccaggacctctt |
4316146 |
T |
|
| Q |
242 |
cattcccctgaaaaccgaagggttaacaaaaagaaaatcattgatcaacagtaaaatcgaagacaccataagtgataaagtagttttgaacggtaaataa |
341 |
Q |
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| T |
4316147 |
cattcccctgaaaaccgaagggttaacaaaaagaaaatcattgatcaacagtaaaatcgaagacaccataagtgataaagtagttttgaacagtaaataa |
4316246 |
T |
|
| Q |
342 |
ccaacacaaaagtaagttaaacgtaatagatgacgatgttgaattaggtgtgtaataaaactagatgaaatatgattagaaacgacaacatttgagaaca |
441 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4316247 |
ccaacacaaaagtaagttaaacgtaatagatgacgatgttgaattaggtgtgtaataaaactagatgaaatatgattagaaacgacaacatttaagaaca |
4316346 |
T |
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| Q |
442 |
tggtcagctcaaacataaggcggaccaaaccctaacttcagacctaaaaataaataaattctaaatgcatttaggtctccaaatnnnnnnntgagaattt |
541 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4316347 |
tggtcagctcaagcataaggcggaccaaaccctaacttcagacctaaaaataaataaattctaaatgcatttaggtctccaaat-aaaaaatgagaattt |
4316445 |
T |
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| Q |
542 |
ctttctcatcctccaaccctctcacgtgtcctttg |
576 |
Q |
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| T |
4316446 |
ctttctcatcctccaaccctctcacgtgtcctttg |
4316480 |
T |
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