View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_61 (Length: 243)
Name: NF10131_low_61
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 33554564 - 33554792
Alignment:
| Q |
1 |
tcttaatcttgatcatactaaa-----gcacattaaaacataatttcaagattcaaagataaatnnnnnnngtacctagaagaagattcaagctgaacaa |
95 |
Q |
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| T |
33554564 |
tcttaatcttgatcatactaaactaaagcacattaaaacataatttcaagattcaaagatatataaaaaaagtacctagaagaagattcaagctgaacaa |
33554663 |
T |
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| Q |
96 |
caagaccaccaaccttaggcaaaactacagaaaccaaagctttaagagctttagaaggacacaaaagattttctggtttgcaaaggtaacaaataacatc |
195 |
Q |
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| T |
33554664 |
caagaccaccaaccttaggcaaaactacagaaaccaaagcattaagagctttagaaggacacaaaagattttctggtttgcaaaggtaacaaataacatc |
33554763 |
T |
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| Q |
196 |
aaccatgcaaactttcccaacacattgac |
224 |
Q |
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| T |
33554764 |
aaccatgcaaactttcccaacacattgac |
33554792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 67 - 224
Target Start/End: Original strand, 33542247 - 33542404
Alignment:
| Q |
67 |
gtacctagaagaagattcaagctgaacaacaagaccaccaaccttaggcaaaactacagaaaccaaagctttaagagctttagaaggacacaaaagattt |
166 |
Q |
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||||||||| |||| ||| || ||||||||||||||| |||||| | ||||| |||| |||| |||||||||||||||||||||||||||||| |
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| T |
33542247 |
gtacctagatgaaggttctagatgaacaacaagaccatcaacctcattgaaaacattggaaatggaagccttaagagctttagaaggacacaaaagattt |
33542346 |
T |
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| Q |
167 |
tctggtttgcaaaggtaacaaataacatcaaccatgcaaactttcccaacacattgac |
224 |
Q |
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|| ||||||||||| || ||||||||||||||| |||| ||||||||||||||||| |
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| T |
33542347 |
tcctgtttgcaaaggaaaacaataacatcaaccatacaaattttcccaacacattgac |
33542404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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