View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10131_low_66 (Length: 239)

Name: NF10131_low_66
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10131_low_66
NF10131_low_66
[»] chr1 (4 HSPs)
chr1 (52-223)||(45653229-45653400)
chr1 (16-56)||(6758539-6758579)
chr1 (1-57)||(31998281-31998337)
chr1 (16-55)||(39216097-39216136)
[»] chr4 (7 HSPs)
chr4 (68-214)||(40948962-40949108)
chr4 (1-54)||(16537259-16537312)
chr4 (1-42)||(33376140-33376181)
chr4 (3-56)||(36072563-36072616)
chr4 (16-57)||(36072677-36072718)
chr4 (1-54)||(49481875-49481928)
chr4 (21-49)||(52673598-52673626)
[»] scaffold0013 (1 HSPs)
scaffold0013 (107-211)||(40744-40848)
[»] chr8 (6 HSPs)
chr8 (1-59)||(2382576-2382634)
chr8 (1-56)||(24287778-24287833)
chr8 (1-42)||(2382678-2382719)
chr8 (1-55)||(40640272-40640326)
chr8 (1-54)||(33070257-33070310)
chr8 (3-55)||(34326239-34326291)
[»] chr5 (3 HSPs)
chr5 (1-55)||(5504469-5504523)
chr5 (1-54)||(7329977-7330030)
chr5 (1-61)||(25037119-25037179)
[»] chr3 (2 HSPs)
chr3 (1-43)||(43818945-43818987)
chr3 (1-49)||(30578314-30578362)
[»] chr7 (1 HSPs)
chr7 (25-57)||(36547702-36547734)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 52 - 223
Target Start/End: Complemental strand, 45653400 - 45653229
Alignment:
Q  52 gtatatattaagattagaaattatatattattacatacctaacagccatgtggatgaattgatcattggtgagatacaagttgtaatggaaaatcaaggt 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45653400 gtatatattaagattagaaattatatattattacatacctaacagccatgtggatgaattgatcattggtgagatacaagttgtaatggaaaatcaaggt 45653301  T
Q  152 cttgattttcccttgactgagtttgagtgcaccaaacaacaaattgtacaaagcgttgtcagagccagaatt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  45653300 cttgattttcccttgactgagtttgagtgcaccaaacaacaaattgtacaaagtgttgtcagagccagaatt 45653229  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 6758579 - 6758539
Alignment:
Q  16 aatgcaaagttttgcttataatagtgacgggaggatgtata 56  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  6758579 aatgcaaagttttgcttataatagtgaccggaggatgtata 6758539  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 31998281 - 31998337
Alignment:
Q  1 aatgaatgtatctgcaatgcaaagttttgcttataatagtgacgggaggatgtatat 57  Q
    |||||||| ||||  |||||||||||||||||||||||||||  ||| |||||||||    
T  31998281 aatgaatgaatctaaaatgcaaagttttgcttataatagtgatcggatgatgtatat 31998337  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 39216136 - 39216097
Alignment:
Q  16 aatgcaaagttttgcttataatagtgacgggaggatgtat 55  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  39216136 aatgcaaagttttgcttataatagtgaccggagggtgtat 39216097  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 40948962 - 40949108
Alignment:
Q  68 gaaattatatattattacatacctaacagccatgtggatgaattgatcattggtgagatacaagttgtaatggaaaatcaaggtcttgattttcccttga 167  Q
    |||||||||| | ||||| ||||| | |||  ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||    
T  40948962 gaaattatatgtaattacgtaccttatagctgtgtagatgaattgatcattggtgagatacaagctgtaattgaaaatcaaggtcttgatattcccttga 40949061  T
Q  168 ctgagtttgagtgcaccaaacaacaaattgtacaaagcgttgtcaga 214  Q
    ||||  || | ||||  ||| | |||||||||||||| | |||||||    
T  40949062 ctgatattcaatgcaagaaatagcaaattgtacaaagtgctgtcaga 40949108  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 16537312 - 16537259
Alignment:
Q  1 aatgaatgtatctgcaatgcaaagttttgcttataatagtgacgggaggatgta 54  Q
    |||||||| ||||  |||||||||||||||||||||||||||  ||||||||||    
T  16537312 aatgaatgaatctataatgcaaagttttgcttataatagtgatcggaggatgta 16537259  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33376181 - 33376140
Alignment:
Q  1 aatgaatgtatctgcaatgcaaagttttgcttataatagtga 42  Q
    |||||||| ||||  |||||||||||||||||||||||||||    
T  33376181 aatgaatgaatctaaaatgcaaagttttgcttataatagtga 33376140  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 36072616 - 36072563
Alignment:
Q  3 tgaatgtatctgcaatgcaaagttttgcttataatagtgacgggaggatgtata 56  Q
    |||||| ||||  |||||||| ||||||||||||||||||| ||||| ||||||    
T  36072616 tgaatgaatctaaaatgcaaaattttgcttataatagtgaccggagggtgtata 36072563  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 36072677 - 36072718
Alignment:
Q  16 aatgcaaagttttgcttataatagtgacgggaggatgtatat 57  Q
    ||||||||||||| |||||||||||||| ||| |||||||||    
T  36072677 aatgcaaagttttacttataatagtgactggaagatgtatat 36072718  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 49481928 - 49481875
Alignment:
Q  1 aatgaatgtatctgcaatgcaaagttttgcttataatagtgacgggaggatgta 54  Q
    |||||||| ||||  |||| ||| ||||||||||||||||||| ||||||||||    
T  49481928 aatgaatgaatctaaaatgtaaacttttgcttataatagtgaccggaggatgta 49481875  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 52673626 - 52673598
Alignment:
Q  21 aaagttttgcttataatagtgacgggagg 49  Q
    |||||||||||||||||||||||||||||    
T  52673626 aaagttttgcttataatagtgacgggagg 52673598  T

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Target: scaffold0013 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 40744 - 40848
Alignment:
Q  107 gaattgatcattggtgagatacaagttgtaatggaaaatcaaggtcttgattttcccttgactgagtttgagtgcaccaaacaacaaattgtacaaagcg 206  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||| ||| | || | || |  ||||||||||||||| |||| |    
T  40744 gaattgatcattggtgagatacaagtagtaatggaaaatcaaagtcttgatattcccttggctgggattcaatgaaataaacaacaaattgtataaagtg 40843  T
Q  207 ttgtc 211  Q
    |||||    
T  40844 ttgtc 40848  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 2382634 - 2382576
Alignment:
Q  1 aatgaatgtatctgcaatgcaaagttttgcttataatagtgacgggaggatgtatatat 59  Q
    |||||||| ||||| ||| |||||||||| ||||||||||||| |||||||||||||||    
T  2382634 aatgaatgaatctgaaatacaaagttttgtttataatagtgactggaggatgtatatat 2382576  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 24287833 - 24287778
Alignment:
Q  1 aatgaatgtatctgcaatgcaaagttttgcttataatagtgacgggaggatgtata 56  Q
    |||||||| ||||  |||||||||||||||||||||||||||| ||||| ||||||    
T  24287833 aatgaatgaatctaaaatgcaaagttttgcttataatagtgaccggagggtgtata 24287778  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2382678 - 2382719
Alignment:
Q  1 aatgaatgtatctgcaatgcaaagttttgcttataatagtga 42  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  2382678 aatgaatgtatctgaaatgcaaagttttgcttataacagtga 2382719  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 40640326 - 40640272
Alignment:
Q  1 aatgaatgtatctgcaatgcaaagttttgcttataatagtgacgggaggatgtat 55  Q
    |||||||| ||||  ||| |||||||||||||||||||||||| ||||| |||||    
T  40640326 aatgaatgaatctaaaatacaaagttttgcttataatagtgaccggagggtgtat 40640272  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33070257 - 33070310
Alignment:
Q  1 aatgaatgtatctgcaatgcaaagttttgcttataatagtgacgggaggatgta 54  Q
    |||||||| ||||  |||||||| ||||||||||||||||||| ||||| ||||    
T  33070257 aatgaatgaatctaaaatgcaaaattttgcttataatagtgaccggagggtgta 33070310  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 34326291 - 34326239
Alignment:
Q  3 tgaatgtatctgcaatgcaaagttttgcttataatagtgacgggaggatgtat 55  Q
    |||||| ||||  ||||||||||||||||||| ||| |||| |||||||||||    
T  34326291 tgaatgaatctaaaatgcaaagttttgcttatgataatgaccggaggatgtat 34326239  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 5504469 - 5504523
Alignment:
Q  1 aatgaatgtatctgcaatgcaaagttttgcttataatagtgacgggaggatgtat 55  Q
    |||||||||||||| ||||||||||||| ||||||||||| || ||||| |||||    
T  5504469 aatgaatgtatctgaaatgcaaagttttacttataatagtaaccggagggtgtat 5504523  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7330030 - 7329977
Alignment:
Q  1 aatgaatgtatctgcaatgcaaagttttgcttataatagtgacgggaggatgta 54  Q
    |||||||| ||||  |||||||||||||||||||||||||||| ||| ||||||    
T  7330030 aatgaatgaatctaaaatgcaaagttttgcttataatagtgactggatgatgta 7329977  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 25037179 - 25037119
Alignment:
Q  1 aatgaatgtatctgcaatgcaaagttttgcttataatagtgacgggaggatgtatatatta 61  Q
    |||||||| ||||  ||||||||||||||||||||||| | || ||||| ||||| |||||    
T  25037179 aatgaatgaatctaaaatgcaaagttttgcttataataataacaggagggtgtatttatta 25037119  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 43818945 - 43818987
Alignment:
Q  1 aatgaatgtatctgcaatgcaaagttttgcttataatagtgac 43  Q
    |||||||| ||||  ||||||||||||||||||||||||||||    
T  43818945 aatgaatgaatctaaaatgcaaagttttgcttataatagtgac 43818987  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30578314 - 30578362
Alignment:
Q  1 aatgaatgtatctgcaatgcaaagttttgcttataatagtgacgggagg 49  Q
    |||||||| ||||  ||| |||||||||||||||||||||||| |||||    
T  30578314 aatgaatgaatctaaaatacaaagttttgcttataatagtgacaggagg 30578362  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 36547702 - 36547734
Alignment:
Q  25 ttttgcttataatagtgacgggaggatgtatat 57  Q
    ||||||||||||||||||| |||||||||||||    
T  36547702 ttttgcttataatagtgaccggaggatgtatat 36547734  T

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