View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_7 (Length: 562)
Name: NF10131_low_7
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 154 - 550
Target Start/End: Original strand, 31658583 - 31658979
Alignment:
| Q |
154 |
ccaatgccaaactttgaaaataaatttacacttagacagaaacatatccatagccatcaaaatcctaactggtcataaacattctcaaattcaaatgatt |
253 |
Q |
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| T |
31658583 |
ccaatgccaaactttgaaaataaatttacacttagacagaaacatatccatagccatcaaaatcctaactggtcataaacattctcaaattcaaatgatt |
31658682 |
T |
|
| Q |
254 |
caatcgatgatagcatagtggcatgtctcaaataatcaaaacaaaattcaaagttacatgatatgaggttatctgatgagaacaattgattttgagaaga |
353 |
Q |
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| T |
31658683 |
caatcgatgatagcatagtggcacgtctcaaataatcaaaataaacttcaaagttacatgatatgaggttatctgatgagaacaattgattttgagaaga |
31658782 |
T |
|
| Q |
354 |
ataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaatggtgatggtggaaacgagttttcttctttaattggaatgttg |
453 |
Q |
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| T |
31658783 |
ataatcatcatgaatctcttccttaggatcctcttttgtagatgcaagaaatggcaatggtgatggtggaaacgagttttcttctttaattggaatgttg |
31658882 |
T |
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| Q |
454 |
ttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatgtccat |
550 |
Q |
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| T |
31658883 |
ttatcaaaactaagtaatatagaagagtcatttgatgacaaaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatggccat |
31658979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 234 - 483
Target Start/End: Complemental strand, 31650553 - 31650298
Alignment:
| Q |
234 |
attctcaaattcaaatgattcaatcgatgatagcatagtggcatgtctcaaataatcaaaacaaaattcaaagttacatgatatgaggttatctgatgag |
333 |
Q |
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| T |
31650553 |
attctcaaattaaaaagattcactcgatgatgactcactgacatgtctcaaataatcaaaataaacatcaaaatcgcataattggagattctccggtgag |
31650454 |
T |
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| Q |
334 |
aacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaat---ggtgatggtggaaacgagt |
430 |
Q |
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| T |
31650453 |
aacaattggttttgaggaaaatgatcatgatgtatctcttccttgggatctccttttgtagatgcaagaagtggcaatggtggtgatggtcgaaatggat |
31650354 |
T |
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| Q |
431 |
tttcttctttaattggaatgttg---ttatcaaaactgagtaatatagaagagtca |
483 |
Q |
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| T |
31650353 |
attcttgtttatttgaaatgttgttattatcgaaactaagtaatattgaagagtca |
31650298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 447 - 545
Target Start/End: Complemental strand, 31657342 - 31657244
Alignment:
| Q |
447 |
aatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatg |
545 |
Q |
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|||||||||||| ||||| ||||||||||||||||||| | ||| |||||||||||| ||||| |||||||| || | ||||||||||||||||| |
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| T |
31657342 |
aatgttgttatcgaaactaagtaatatagaagagtcatcgtagcacaaaatggattccaattttatgtctgaatggtaagagcttttgcaagtgtgatg |
31657244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 31658521 - 31658558
Alignment:
| Q |
15 |
gacatcataagttaaacgatcaaataaatctcccatta |
52 |
Q |
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| T |
31658521 |
gacatcataagttaaacgatcaaataaatctcccatta |
31658558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 411
Target Start/End: Complemental strand, 31657434 - 31657390
Alignment:
| Q |
367 |
atctcttccttaggatcctctattgtagatgcaagaaatggcaat |
411 |
Q |
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| T |
31657434 |
atctcttccttgggttcctcttttgtagatgcaagaagtggcaat |
31657390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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