View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10131_low_73 (Length: 236)

Name: NF10131_low_73
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10131_low_73
NF10131_low_73
[»] chr6 (3 HSPs)
chr6 (1-114)||(1170532-1170644)
chr6 (1-114)||(20391305-20391418)
chr6 (194-232)||(1170726-1170764)
[»] chr7 (4 HSPs)
chr7 (5-114)||(5610254-5610363)
chr7 (1-114)||(30512139-30512251)
chr7 (3-75)||(36119461-36119533)
chr7 (49-114)||(43066144-43066209)
[»] chr4 (4 HSPs)
chr4 (5-106)||(32698090-32698191)
chr4 (1-114)||(45618377-45618490)
chr4 (46-110)||(40199526-40199590)
chr4 (1-63)||(29059806-29059868)
[»] chr8 (1 HSPs)
chr8 (1-114)||(36588315-36588428)
[»] chr5 (1 HSPs)
chr5 (29-114)||(3936699-3936784)
[»] chr3 (1 HSPs)
chr3 (1-76)||(41780701-41780776)
[»] scaffold0106 (1 HSPs)
scaffold0106 (80-114)||(30761-30795)
[»] chr1 (1 HSPs)
chr1 (1-66)||(24422608-24422673)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 1170532 - 1170644
Alignment:
Q  1 tttgtttttaaaaatagtccttagatctacttttttgctgttttatcacatttttgcttatgtggcccttgctgaccgtgcaaaaacgtacagatggcac 100  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  1170532 tttgtttttaaaaatagtccttaggtccacttttttgctgttttgtcacatttttacttatgtggcccttgctg-ccgtgcaaaaacgtacagatggcac 1170630  T
Q  101 acaagtggcaattg 114  Q
    ||||||||||||||    
T  1170631 acaagtggcaattg 1170644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 20391305 - 20391418
Alignment:
Q  1 tttgtttttaaaaatagtccttagatctacttttttgctgttttatcacatttttgcttatgtggcccttgctgaccgtgcaaaaacgtacagatggcac 100  Q
    ||||||||| |||||||||| |   || |||||||| ||  ||| |||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||    
T  20391305 tttgttttttaaaatagtccatgtgtccacttttttacttatttgtcacgttttttcttatgtggcccttgttgaccgtgcaaaaacgtacacatggcac 20391404  T
Q  101 acaagtggcaattg 114  Q
    ||||||||||||||    
T  20391405 acaagtggcaattg 20391418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 1170726 - 1170764
Alignment:
Q  194 gagattcagcattctgttcttctccaaccctttgcttct 232  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  1170726 gagattcagcattctgttcttctccaacccttttcttct 1170764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 5610254 - 5610363
Alignment:
Q  5 tttttaaaaatagtccttagatctacttttttgctgttttatcacatttttgcttatgtggcccttgctgaccgtgcaaaaacgtacagatggcacacaa 104  Q
    ||||| |||||||| ||| | || |||||||||||| ||| ||||||||||||||||||||||| | ||||| ||||||||||||||| |||||||||||    
T  5610254 ttttttaaaatagttcttgggtccacttttttgctgatttgtcacatttttgcttatgtggcccatactgactgtgcaaaaacgtacacatggcacacaa 5610353  T
Q  105 gtggcaattg 114  Q
    ||||||||||    
T  5610354 gtggcaattg 5610363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 30512139 - 30512251
Alignment:
Q  1 tttgtttttaaaaatagtccttagatctacttttttgctgttttatcacatttttgcttatgtggcccttgctgaccgtgcaaaaacgtacagatggcac 100  Q
    ||||||||| ||||||||| || | || ||||||| |||| |||||||||||||||||||||||  | ||  |||||||||||||||||||| |||||||    
T  30512139 tttgttttttaaaatagtctttgggtccactttttagctgatttatcacatttttgcttatgtgatc-ttattgaccgtgcaaaaacgtacacatggcac 30512237  T
Q  101 acaagtggcaattg 114  Q
    | |||| |||||||    
T  30512238 aaaagtagcaattg 30512251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 36119461 - 36119533
Alignment:
Q  3 tgtttttaaaaatagtccttagatctacttttttgctgttttatcacatttttgcttatgtggcccttgctga 75  Q
    ||||||||||||||||||||  ||| ||||| |||||| |||  ||||||||  |||||||||| ||||||||    
T  36119461 tgtttttaaaaatagtccttgaatccactttgttgctgattttgcacattttaccttatgtggcacttgctga 36119533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 43066144 - 43066209
Alignment:
Q  49 catttttgcttatgtggcccttgctgaccgtgcaaaaacgtacagatggcacacaagtggcaattg 114  Q
    ||||||||| ||||||||  |  ||||| |||||||||| ||||  ||||||||||||||||||||    
T  43066144 catttttgcctatgtggcattctctgactgtgcaaaaacatacacgtggcacacaagtggcaattg 43066209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 32698090 - 32698191
Alignment:
Q  5 tttttaaaaatagtccttagatctacttttttgctgttttatcacatttttgcttatgtggcccttgctgaccgtgcaaaaacgtacagatggcacacaa 104  Q
    ||||| ||||||||| || | || |||||||||||| ||| |||||||||||||||||||| |||||||||| |||||||||| |||| |||| ||||||    
T  32698090 ttttttaaaatagtcattgggtccacttttttgctgatttgtcacatttttgcttatgtggtccttgctgactgtgcaaaaacatacacatggaacacaa 32698189  T
Q  105 gt 106  Q
    ||    
T  32698190 gt 32698191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 45618377 - 45618490
Alignment:
Q  1 tttgtttttaaaaatagtccttagatctacttttttgctgttttatcacatttttgcttatgtggcccttgctgaccgtgcaaaaacgtacagatggcac 100  Q
    ||||||||| ||||  |||||| || | |||||||||||| |||||||||||||| |||||||| |   |||||||  |||||||| |||||  || ||     
T  45618377 tttgttttttaaaacggtccttggacccacttttttgctgatttatcacatttttacttatgtgtcagctgctgactatgcaaaaatgtacatgtgacat 45618476  T
Q  101 acaagtggcaattg 114  Q
    |||| |||||||||    
T  45618477 acaaatggcaattg 45618490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 40199590 - 40199526
Alignment:
Q  46 tcacatttttgcttatgtggcccttgctgaccgtgcaaaaacgtacagatggcacacaagtggca 110  Q
    ||||||||||||||||| | ||||||||||| || |||||| ||||| ||  |||||||||||||    
T  40199590 tcacatttttgcttatgcgacccttgctgactgttcaaaaatgtacacataacacacaagtggca 40199526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 29059806 - 29059868
Alignment:
Q  1 tttgtttttaaaaatagtccttagatctacttttttgctgttttatcacatttttgcttatgt 63  Q
    ||||||||| ||||||||| || |||||||||| |||||| |||  || ||||||||||||||    
T  29059806 tttgttttttaaaatagtcattggatctactttcttgctgatttgacagatttttgcttatgt 29059868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 36588315 - 36588428
Alignment:
Q  1 tttgtttttaaaaatagtccttagatctacttttttgctgttttatcacatttttgcttatgtggcccttgctgaccgtgcaaaaacgtacagatggcac 100  Q
    ||||||||| ||||| |||| | || | |||||||||||| |||||||||||||| ||||||||    ||||||||  |||||||| |||||  |||||     
T  36588315 tttgttttttaaaatggtccctggacccacttttttgctgatttatcacatttttacttatgtgttagttgctgactatgcaaaaatgtacatgtggcat 36588414  T
Q  101 acaagtggcaattg 114  Q
    |||| |||||||||    
T  36588415 acaaatggcaattg 36588428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 3936699 - 3936784
Alignment:
Q  29 acttttttgctgttttatcacatttttgcttatgtggcccttgctgaccgtgcaaaaacgtacagatggcacacaagtggcaattg 114  Q
    |||||||||||| |||||||||||||| ||||||||    ||||||||  |||||||| |||||  ||||| |||| |||||||||    
T  3936699 acttttttgctgatttatcacatttttacttatgtgttagttgctgactatgcaaaaatgtacatgtggcatacaaatggcaattg 3936784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 41780776 - 41780701
Alignment:
Q  1 tttgtttttaaaaatagtccttagatctacttttttgctgttttatcacatttttgcttatgtggcccttgctgac 76  Q
    ||||||||| |||||||||| | || ||||||| |||||| |||  |||||| ||||||||||||| |||| ||||    
T  41780776 tttgttttttaaaatagtccatggacctactttcttgctgatttgacacattattgcttatgtggcacttgatgac 41780701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 30795 - 30761
Alignment:
Q  80 gcaaaaacgtacagatggcacacaagtggcaattg 114  Q
    |||||||||||||| ||||||||||||||||||||    
T  30795 gcaaaaacgtacaggtggcacacaagtggcaattg 30761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24422608 - 24422673
Alignment:
Q  1 tttgtttttaaaaatagtccttagatctacttttttgctgttttatcacatttttgcttatgtggc 66  Q
    ||||||||||||||||||||||||| | ||||| |||||  ||| || ||||| ||| ||||||||    
T  24422608 tttgtttttaaaaatagtccttagacccactttcttgctaatttgtctcatttctgcctatgtggc 24422673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University