View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10131_low_76 (Length: 229)

Name: NF10131_low_76
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10131_low_76
NF10131_low_76
[»] chr7 (3 HSPs)
chr7 (7-229)||(18934463-18934685)
chr7 (16-226)||(34726108-34726318)
chr7 (116-229)||(34716383-34716496)
[»] chr4 (12 HSPs)
chr4 (7-219)||(7887258-7887470)
chr4 (17-127)||(6533479-6533589)
chr4 (7-86)||(4344131-4344210)
chr4 (7-86)||(4352410-4352489)
chr4 (8-86)||(4125236-4125314)
chr4 (10-127)||(4134581-4134698)
chr4 (7-86)||(4334673-4334752)
chr4 (7-86)||(6650167-6650246)
chr4 (7-127)||(6623224-6623344)
chr4 (11-86)||(4321830-4321905)
chr4 (7-86)||(6499130-6499209)
chr4 (7-86)||(6757496-6757575)
[»] chr6 (7 HSPs)
chr6 (7-127)||(5103708-5103828)
chr6 (7-127)||(5342765-5342885)
chr6 (7-88)||(5424753-5424834)
chr6 (7-131)||(5182676-5182800)
chr6 (7-131)||(5396191-5396315)
chr6 (36-86)||(5382775-5382825)
chr6 (7-95)||(5349377-5349465)
[»] scaffold0286 (1 HSPs)
scaffold0286 (7-86)||(5758-5837)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 18934463 - 18934685
Alignment:
Q  7 aaagcattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgcttt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18934463 aaagcattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgcttt 18934562  T
Q  107 gttggcatggatttcctttaaaatgtacaccagctgactttcatcaagaatgtattgtggctgttgacttaaaatattccaatctggaacgagtgtggag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18934563 gttggcatggatttcctttaaaatgtacaccagctgactttcatcaagaatgtatcgtggctgttgacttaaaatattccaatctggaacgagtgtggag 18934662  T
Q  207 gaagtcccaggtacaagtttagt 229  Q
    |||||||||||||||||||||||    
T  18934663 gaagtcccaggtacaagtttagt 18934685  T

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Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 34726318 - 34726108
Alignment:
Q  16 gagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatg 115  Q
    |||||||| |||||||||||||| ||||| ||| |||| ||||||||| | ||| |||||||||||||||| | |||| ||  || ||||||||||||||    
T  34726318 gagaagatcaataagcttaaatttcttcagcttgctggcgtacaacttgaaggaaattacaaatatctttccagagatattcgatggctttgttggcatg 34726219  T
Q  116 gatttcctttaaaatgtacaccagctgactttcatcaagaatgtattgtggctgttgacttaaaatattccaatctggaacgagtgtggaggaagtccca 215  Q
    ||||||||||||| | ||||||||  || ||||||||||||  | | || |||||||| |||||||||||| |||| |||| |||||||| |||||||||    
T  34726218 gatttcctttaaagtatacaccagaagagtttcatcaagaacatttagttgctgttgatttaaaatattcccatcttgaacaagtgtggaagaagtccca 34726119  T
Q  216 ggtacaagttt 226  Q
    |||||||||||    
T  34726118 ggtacaagttt 34726108  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 34716496 - 34716383
Alignment:
Q  116 gatttcctttaaaatgtacaccagctgactttcatcaagaatgtattgtggctgttgacttaaaatattccaatctggaacgagtgtggaggaagtccca 215  Q
    |||| |||||||||||||||||||| |||||| ||||||||  | | || |||||||| |||||||||||||||||||||||||||||||  |||||| |    
T  34716496 gattccctttaaaatgtacaccagcagacttttatcaagaacatttagttgctgttgatttaaaatattccaatctggaacgagtgtggaaaaagtccta 34716397  T
Q  216 ggtacaagtttagt 229  Q
     |||||||||||||    
T  34716396 agtacaagtttagt 34716383  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 219
Target Start/End: Complemental strand, 7887470 - 7887258
Alignment:
Q  7 aaagcattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgcttt 106  Q
    |||||||| ||||||||| | ||||| | ||| |||||||||  |||  ||||||||||||||||||||||||||||||| | | ||||||  | ||||     
T  7887470 aaagcatttgagaagatggacaagctaagatttcttcaacttgttggcatacaacttaatggagattacaaatatctttcaagacatcttaggtggctta 7887371  T
Q  107 gttggcatggatttcctttaaaatgtacaccagctgactttcatcaagaatgtattgtggctgttgacttaaaatattccaatctggaacgagtgtggag 206  Q
    ||||||||||||| |||||||||| || ||| || ||||||||||||||   | | || ||||||| ||| |||||||||||||||||||||||||||||    
T  7887370 gttggcatggattccctttaaaatatatacctgccgactttcatcaagatactctagttgctgttgtcttgaaatattccaatctggaacgagtgtggag 7887271  T
Q  207 gaagtcccaggta 219  Q
     ||||| ||||||    
T  7887270 aaagtctcaggta 7887258  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 6533589 - 6533479
Alignment:
Q  17 agaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatgg 116  Q
    |||||||||||||||| | ||||||||||||| ||||||| ||||| ||||||||||  |||| |||||| | |||||||| || ||| |  ||||||||    
T  6533589 agaagatgaataagctcagattgcttcaacttgctggtgtgcaactgaatggagattttaaatgtctttcaagagatcttagatggctgtactggcatgg 6533490  T
Q  117 atttcctttaa 127  Q
    |||||| ||||    
T  6533489 atttccattaa 6533479  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 4344131 - 4344210
Alignment:
Q  7 aaagcattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 86  Q
    |||||||| ||||| ||||| || |||| |||||| ||||||||||||||||||||| |||||||||  |||||||||||    
T  4344131 aaagcatttgagaacatgaagaaacttagattgctgcaactttctggtgtacaacttgatggagattttaaatatctttc 4344210  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 4352410 - 4352489
Alignment:
Q  7 aaagcattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 86  Q
    |||||||| ||||| ||||| || || | |||||| ||||||||||||||||||||| |||||||||  |||||||||||    
T  4352410 aaagcatttgagaacatgaagaaactcagattgctgcaactttctggtgtacaacttgatggagattttaaatatctttc 4352489  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 4125314 - 4125236
Alignment:
Q  8 aagcattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 86  Q
    |||||||  |||||||||| || || | |||||||||||||||||||| ||||||| |||||||||  |||||||||||    
T  4125314 aagcatttaagaagatgaagaaactcagattgcttcaactttctggtgcacaacttgatggagattttaaatatctttc 4125236  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 4134698 - 4134581
Alignment:
Q  10 gcattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgtt 109  Q
    ||||| ||||| ||||| || || | ||||||||||| |||||||||||||||| |||||||||  ||||||||||| | | || | | || ||| ||||    
T  4134698 gcatttgagaacatgaagaaactgagattgcttcaaccttctggtgtacaacttgatggagattttaaatatctttcaagaaatttgagatggctgtgtt 4134599  T
Q  110 ggcatggatttcctttaa 127  Q
    || ||| |||||||||||    
T  4134598 ggaatgaatttcctttaa 4134581  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 4334673 - 4334752
Alignment:
Q  7 aaagcattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 86  Q
    ||||||||  |||||||||| || || | |||||||||||||||||| | ||||||| |||||||||  |||||||||||    
T  4334673 aaagcatttaagaagatgaagaaactcagattgcttcaactttctggcgcacaacttgatggagattttaaatatctttc 4334752  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 6650167 - 6650246
Alignment:
Q  7 aaagcattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 86  Q
    ||||||||| ||||||||||||| || | ||||||||||||||| || || || |||||||||||||  ||||| |||||    
T  6650167 aaagcattcaagaagatgaataaactcagattgcttcaactttccggggttcagcttaatggagattttaaatacctttc 6650246  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 6623344 - 6623224
Alignment:
Q  7 aaagcattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgcttt 106  Q
    ||||||||  ||||||||||||| || | ||||||||||||||| || || || |||||||||||||  ||||| |||||   ||| ||||  | |||||    
T  6623344 aaagcatttaagaagatgaataaactcagattgcttcaactttccggggttcagcttaatggagattttaaatacctttcaggagaacttaggtggcttt 6623245  T
Q  107 gttggcatggatttcctttaa 127  Q
      |||||||||||||| ||||    
T  6623244 actggcatggatttccattaa 6623224  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 4321905 - 4321830
Alignment:
Q  11 cattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 86  Q
    |||| ||||| ||||| || || | |||||| ||||||||||||||||||||| |||||||||  |||||| ||||    
T  4321905 catttgagaacatgaagaaactcagattgctgcaactttctggtgtacaacttgatggagattttaaatatatttc 4321830  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 6499209 - 6499130
Alignment:
Q  7 aaagcattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 86  Q
    ||||||||  ||||||||||||| || | ||||||||||||||| || || || |||||||||||||  ||||| |||||    
T  6499209 aaagcatttaagaagatgaataaactcagattgcttcaactttccggggttcagcttaatggagattttaaatacctttc 6499130  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 6757496 - 6757575
Alignment:
Q  7 aaagcattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 86  Q
    ||||||||  ||||||||||||| || | |||||| ||||||  ||| ||||| |||||||||||||  |||||||||||    
T  6757496 aaagcatttaagaagatgaataaactcagattgctacaacttgttggggtacagcttaatggagattttaaatatctttc 6757575  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 5103828 - 5103708
Alignment:
Q  7 aaagcattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgcttt 106  Q
    ||||||||| |||||||||| |  |||| | |||||||||||||||| ||| ||||| |||||||||   |||||||||||| | |||| | |||||| |    
T  5103828 aaagcattcaagaagatgaagagacttagactgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgt 5103729  T
Q  107 gttggcatggatttcctttaa 127  Q
     |||| |||||||| ||||||    
T  5103728 cttggaatggattttctttaa 5103708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 5342765 - 5342885
Alignment:
Q  7 aaagcattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgcttt 106  Q
    |||||||| || ||||||||||| || | |||||||||||||||||| ||||||||| |||||||||   | |||||||| | | | || | || ||| |    
T  5342765 aaagcatttgaaaagatgaataaactaagattgcttcaactttctggcgtacaacttgatggagattttgactatctttctagaaaactaagatggctat 5342864  T
Q  107 gttggcatggatttcctttaa 127  Q
    ||||| |||||||||||||||    
T  5342865 gttggaatggatttcctttaa 5342885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 5424753 - 5424834
Alignment:
Q  7 aaagcattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcga 88  Q
    ||||||||| |||||||||  |  || | ||||||||||||| |||| ||| |||||||||||||||  |||||||||||||    
T  5424753 aaagcattcaagaagatgacgagactcagattgcttcaacttgctggggtaaaacttaatggagattttaaatatctttcga 5424834  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 5182800 - 5182676
Alignment:
Q  7 aaagcattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgcttt 106  Q
    ||||||||| || ||||||| || |||| | ||||||||||| || ||||||||||| | || || |   |||||||||| | | |||| |||| |||||    
T  5182800 aaagcattcaaggagatgaaaaaacttagactgcttcaacttgctagtgtacaacttgagggggactttgaatatctttcaagaaatctgatatggcttt 5182701  T
Q  107 gttggcatggatttcctttaaaatg 131  Q
     |||| ||||||||||||| |||||    
T  5182700 cttggaatggatttcctttgaaatg 5182676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 5396191 - 5396315
Alignment:
Q  7 aaagcattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgcttt 106  Q
    ||||||||| |||||||||| || || | | ||||||||||| ||||| |||||||| |||| ||||   |||||||||| | | || | | || |||||    
T  5396191 aaagcattcaagaagatgaaaaaactcagactgcttcaacttgctggtttacaacttgatggtgattttgaatatctttcaagaaatgtgagatggcttt 5396290  T
Q  107 gttggcatggatttcctttaaaatg 131  Q
     |||| ||| |||||||||||||||    
T  5396291 cttggaatgcatttcctttaaaatg 5396315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 5382775 - 5382825
Alignment:
Q  36 attgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 86  Q
    ||||||||||||| |||| ||||||||| ||||||||| ||| ||||||||    
T  5382775 attgcttcaacttgctggagtacaacttgatggagatttcaagtatctttc 5382825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 5349377 - 5349465
Alignment:
Q  7 aaagcattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatct 95  Q
    ||||||||| |||||||||| |  || | ||||||||||||| |||| ||| ||||| |||||||||   |||||||||| ||| ||||    
T  5349377 aaagcattcaagaagatgaagagactcagattgcttcaacttgctggggtaaaacttgatggagattttgaatatctttcaaaaaatct 5349465  T

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Target: scaffold0286 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 5758 - 5837
Alignment:
Q  7 aaagcattcgagaagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 86  Q
    ||||||||  ||||||||||||| || | ||||||||||||||| || || || |||||||||||||  ||||| |||||    
T  5758 aaagcatttaagaagatgaataaactcagattgcttcaactttccggggttcagcttaatggagattttaaatacctttc 5837  T

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