View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10131_low_9 (Length: 433)
Name: NF10131_low_9
Description: NF10131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10131_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 25014539 - 25014952
Alignment:
| Q |
1 |
aaaaagtggagggcacgcgagaagcaagtaaagtggaaaaataaattcttatgnnnnnnnncctattgaatttcttgataaggattttgtttcgatttca |
100 |
Q |
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| T |
25014539 |
aaaaagtggagggcacgcgagaagcaagtaaagtggaaaaataaattcttatgttttttttcctactgaatttcttgataaggattttgtttcgatttca |
25014638 |
T |
|
| Q |
101 |
atttcgttgcaccgctttaccaaggtattgtccagtttaggtctttgcgtaaattctcatagttttatccttagttaaagggagtcttagagggttgatg |
200 |
Q |
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| T |
25014639 |
atttcgttgcaccgctttaccaaagtattgtccagtttaggtctttgtgtaaattctcatagttttatccttagttaaagggagtcttagagggttgatg |
25014738 |
T |
|
| Q |
201 |
aggtgtttataaactaccttttaatattgattcttaaacaatgcgaaaatttctactgtacaaaaacaatagccccaaatcaatgctaattaaggggtat |
300 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25014739 |
aggtgtttataaactaccttttaatatcgattcttaaacaatgcgaaaatttctattgtacaaaaacaatagccccaaatcaatgctaattaaggggtat |
25014838 |
T |
|
| Q |
301 |
gttaaccctagtacgtgacttaaaaacgcttactcacagacaacaccaatgtaagttcctagggttttgttcttagttaaaaggcacttcaacgagttaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25014839 |
gttaaccctagtacgtgacttaaaaacgcttactcacagacaacaccaatgtaagttcctagggttttgttcttagttaaaaggcacttcaacgagataa |
25014938 |
T |
|
| Q |
401 |
aaatatgtgcgatc |
414 |
Q |
| |
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||||||||| |||| |
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| T |
25014939 |
aaatatgtgtgatc |
25014952 |
T |
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