View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10132_high_1 (Length: 403)
Name: NF10132_high_1
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_high_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 41992873 - 41993263
Alignment:
| Q |
1 |
cgcggcgaaaaatcacagtggatcagaagctacacattggaacttctaaaattcgcattgagagagctttgaactcgtggtagcagtgtccaccgttcaa |
100 |
Q |
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| T |
41992873 |
cgcggcgaaaaatcacagtggatcagaagctacacattggaacttctaaaattcgcattgagagtgctttgaactcgtggtagcagtgtccaccgttcaa |
41992972 |
T |
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| Q |
101 |
ccaaacacatgctaagtagttagttaagttgagatctttttaagacttagaagttccaagcttggttccatgaaaatagaacaagattggttctttctan |
200 |
Q |
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| T |
41992973 |
ccaaacacatgctaagtagttagttaagttgagatctttttaagacttagaagttccaagcttggttccatgaaaatagaacaagattggttctttctat |
41993072 |
T |
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| Q |
201 |
nnnnnnnnnnnnnnnnnnncttctttagcttcttcctttgattcatggtggggtgtaaatagctgacgacttggatattatgggagagtgtaacannnnn |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41993073 |
ttttt---------------ttctttagcttcttcctttgattcatggtggggtgtaaatagctgacggcttggatattatgggagagtgtaaca-tttt |
41993156 |
T |
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| Q |
301 |
nnnnnncacgggtagctagcctttatgtacatccgaatatcaatgaattatatcaatcaatgatt----aacgatatcaattttgtctcaaagtctattt |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
41993157 |
ttttttcacgggtagctagcctttatgtacatccgaatatcaatgaattatatcaatcaatgattaacgaacgatatcaattttgtctcaaagtccattt |
41993256 |
T |
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