View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10132_high_3 (Length: 341)
Name: NF10132_high_3
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 33902420 - 33902094
Alignment:
| Q |
1 |
aactccaacaatttctccatccaatgatgccaaaattcctgtttgagccatgttttcagcttctgctagtatttcttcagcttccaccgaaatagctatg |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33902420 |
aactccaacaatttctccatccaatgataccaaaattcctgtttgagccatgttttcagcttctgctagtatttcttcagcttccactgaaatagctatg |
33902321 |
T |
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| Q |
101 |
ttatgatctaacatcagttttttatttccaaccattatttccttgttttgaacaattgctttcactccatgtcctgcaatagacacaaattcttttgctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33902320 |
ttatgatctaacatcagttttttatttccaaccattatttccttgttttgaacaattgctttcactccatgtcctgcaatagacacaaattcttttgctt |
33902221 |
T |
|
| Q |
201 |
ctggccaggatgagttattttgttcatcttgtgtgatatttttggcatgatcaacaatggactttgctattggatgttcactattcacctaatgatgtag |
300 |
Q |
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| T |
33902220 |
gtggccatgatgggttattttgttcatcttgtgtgatatttttggcatgatcaacaatggactttgctattggatgttcactattcacctaatgatgtag |
33902121 |
T |
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| Q |
301 |
atataacaatcaacattattgaacaat |
327 |
Q |
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| T |
33902120 |
atataacaatcaacattattgaacaat |
33902094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 33919500 - 33919336
Alignment:
| Q |
1 |
aactccaacaatttctccatccaatgatgccaaaattcctgtttgagccatgttttcagcttctgctagtatttcttcagcttccaccgaaatagctatg |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33919500 |
aactccaacaatttctccatccaatgataccaaaattcctgtttgagccatgttttcagcttctgctagtatttcttcagcttccactgaaatagctatg |
33919401 |
T |
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| Q |
101 |
ttatgatctaacatcagttttttatttccaaccattatttccttgttttgaacaattgctttcac |
165 |
Q |
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| T |
33919400 |
ttatgatctaacatcagttttttatttccaaccattatttccttgttttgaacaattgccttcac |
33919336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 2775461 - 2775510
Alignment:
| Q |
32 |
aaaattcctgtttgagccatgttttcagcttctgctagtatttcttcagc |
81 |
Q |
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|||||||||||||||||||||||||| ||||| || |||| |||||||| |
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| T |
2775461 |
aaaattcctgtttgagccatgttttcggcttcagcaagtagatcttcagc |
2775510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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