View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10132_high_6 (Length: 229)
Name: NF10132_high_6
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_high_6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 79 - 229
Target Start/End: Complemental strand, 2091901 - 2091751
Alignment:
| Q |
79 |
tatgatcatgtgaaattttatgagtctaaatctatcaaccaaaaacttcattggttgcatacagaaactgaaggggttaaattgattcctgatgtattaa |
178 |
Q |
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| T |
2091901 |
tatgatcatgtgaaattttatgagtctaaatctatcaaccaaaaacttcattggttgcatacagaaactgaaggggttaaattgattcctgatatattaa |
2091802 |
T |
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| Q |
179 |
ccttgatgatgcagagcttgtacaacttaaatgttaggaaaatggtggtca |
229 |
Q |
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| T |
2091801 |
ccttgatgatacagaacttgtacaacttaaatgttaggaaaatggtggtca |
2091751 |
T |
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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 2091948 - 2091918
Alignment:
| Q |
7 |
agaaataaaggtaaaatacacctaaacttaa |
37 |
Q |
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| T |
2091948 |
agaaataaaggtaaaatacacctaaacttaa |
2091918 |
T |
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