View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10132_low_10 (Length: 411)

Name: NF10132_low_10
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10132_low_10
NF10132_low_10
[»] chr8 (3 HSPs)
chr8 (11-411)||(15348587-15348987)
chr8 (297-404)||(12195317-12195424)
chr8 (297-404)||(12439745-12439852)
[»] chr4 (22 HSPs)
chr4 (46-241)||(48870302-48870497)
chr4 (46-241)||(48885988-48886183)
chr4 (298-404)||(48891430-48891536)
chr4 (46-226)||(48875606-48875786)
chr4 (281-390)||(48170533-48170642)
chr4 (202-322)||(48147756-48147876)
chr4 (140-242)||(50250909-50251011)
chr4 (304-404)||(48852690-48852790)
chr4 (364-404)||(48898794-48898834)
chr4 (193-330)||(48705390-48705527)
chr4 (153-250)||(48891279-48891376)
chr4 (270-335)||(48898694-48898759)
chr4 (90-177)||(45366402-45366489)
chr4 (80-215)||(45372215-45372350)
chr4 (153-242)||(48852530-48852619)
chr4 (274-322)||(48735421-48735469)
chr4 (143-226)||(37827129-37827212)
chr4 (185-328)||(45384901-45385044)
chr4 (289-351)||(7877738-7877800)
chr4 (350-390)||(43596406-43596446)
chr4 (150-226)||(48902802-48902878)
chr4 (364-404)||(49041115-49041155)
[»] chr3 (3 HSPs)
chr3 (140-338)||(47451930-47452128)
chr3 (281-333)||(11015544-11015596)
chr3 (140-212)||(11015668-11015740)
[»] chr5 (2 HSPs)
chr5 (149-335)||(29696075-29696261)
chr5 (150-228)||(29687975-29688053)
[»] chr6 (1 HSPs)
chr6 (152-247)||(21015672-21015767)
[»] chr7 (1 HSPs)
chr7 (363-404)||(48883887-48883928)


Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 411
Target Start/End: Original strand, 15348587 - 15348987
Alignment:
Q  11 cacagactcgtagaattttgtgcataggtcatctacctcattctatagatttagcaacatcgcttgatgatgattctacttctgcttcactcaatgttga 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  15348587 cacacactcgtagaattttgtgcataggtcatctacctcattctatagatttagcagcatcgcttgatgattattctacttctgcttcactcaatgttga 15348686  T
Q  111 ttttctacatccacaaaatcattctgattttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatcca 210  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15348687 ttttctacatccacaaaatcattctgattttgaaattaaaggttcatgtagaggctttgtacttttgaactattattcaatcctctatctatggaatcca 15348786  T
Q  211 tccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaattaaaagatgatt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348787 tccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaattaaaagatgatt 15348886  T
Q  311 acttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcattgagagataatgtgtggaaggaaatggactg 410  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15348887 acttggtggttttaatgtcctatgatcccgccttagataatatttattcgtgtttggagtttttctcgttgagagataatgtgtggaaggaaatggactg 15348986  T
Q  411 c 411  Q
    |    
T  15348987 c 15348987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 297 - 404
Target Start/End: Original strand, 12195317 - 12195424
Alignment:
Q  297 attaaaagatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcattgagagataatgtgtgg 396  Q
    ||||| ||||||||||||||| |||||| ||||||||||||| |||||||  || | ||  |||| ||| || |||||||||||||||||||||  ||||    
T  12195317 attaagagatgattacttggtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcattgagagataataagtgg 12195416  T
Q  397 aaggaaat 404  Q
    || |||||    
T  12195417 aatgaaat 12195424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 297 - 404
Target Start/End: Original strand, 12439745 - 12439852
Alignment:
Q  297 attaaaagatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcattgagagataatgtgtgg 396  Q
    ||||| ||||||||||||||| |||||| ||||||||||||| |||||||  || | ||  |||| ||| || |||||||||||||||||||||  ||||    
T  12439745 attaagagatgattacttggtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcattgagagataataagtgg 12439844  T
Q  397 aaggaaat 404  Q
    || |||||    
T  12439845 aatgaaat 12439852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 46 - 241
Target Start/End: Original strand, 48870302 - 48870497
Alignment:
Q  46 cctcattctatagatttagcaacatcgcttgatgatgattctacttctgcttcactcaatgttgattttctacatccacaaaatcattctgattttgaaa 145  Q
    |||| |||||||||||||| | ||||||||| | |||||||||  ||| ||||| ||||| |||||||||| | |||  ||  | ||| |||||||||||    
T  48870302 cctcgttctatagatttagaagcatcgcttgcttatgattctatctcttcttcagtcaatcttgattttctgcttcctgaatcttattatgattttgaaa 48870401  T
Q  146 ttgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagtacctttgt 241  Q
    || |||||||||||||||||||| || | ||| | | |  | ||| |||||| |||||||||||||||||||||||||||| | || |||||||||    
T  48870402 ttaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaatacctttgt 48870497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 46 - 241
Target Start/End: Original strand, 48885988 - 48886183
Alignment:
Q  46 cctcattctatagatttagcaacatcgcttgatgatgattctacttctgcttcactcaatgttgattttctacatccacaaaatcattctgattttgaaa 145  Q
    |||| |||||||||||||| | ||||||||| | |||||||||  ||| ||||| ||||| |||||||||| | |||  ||  | ||| |||||||||||    
T  48885988 cctcgttctatagatttagaagcatcgcttgcttatgattctatctcttcttcagtcaatcttgattttctgcttcctgaatcttattatgattttgaaa 48886087  T
Q  146 ttgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagtacctttgt 241  Q
    || |||||||||||||||||||| || | ||| | | |  | ||| |||||| |||||||||||||||||||||||||||| | || |||||||||    
T  48886088 ttaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaatacctttgt 48886183  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 298 - 404
Target Start/End: Original strand, 48891430 - 48891536
Alignment:
Q  298 ttaaaagatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcattgagagataatgtgtgga 397  Q
    |||| ||||||||| |||||||||| | ||||||||||| | |||||||||  || | || || ||||||||||||||||||||||||||||| ||||||    
T  48891430 ttaagagatgattagttggtggtttcagtgtcctatgatacaaccttagatggtaatcatccgcgtttggagtttttctcattgagagataatatgtgga 48891529  T
Q  398 aggaaat 404  Q
    | |||||    
T  48891530 aagaaat 48891536  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 46 - 226
Target Start/End: Original strand, 48875606 - 48875786
Alignment:
Q  46 cctcattctatagatttagcaacatcgcttgatgatgattctacttctgcttcactcaatgttgattttctacatccacaaaatcattctgattttgaaa 145  Q
    ||||| ||||||||||| | | ||||||||| | ||||| ||| |||| || |  ||||| |||||||||| | |||  ||  | | | |||||||||||    
T  48875606 cctcagtctatagatttggaagcatcgcttggttatgatactatttcttctgcggtcaatcttgattttcttcttcctgaacctaactatgattttgaaa 48875705  T
Q  146 ttgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcaca 226  Q
    || ||||||| || ||||||||| |||| ||| | | || ||||| |||||| ||||||||||||||||||||||||||||    
T  48875706 ttaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccaccggatttcaca 48875786  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 390
Target Start/End: Complemental strand, 48170642 - 48170533
Alignment:
Q  281 gtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcatt 380  Q
    |||| |||||||| || |||| |||||||||||| ||||||| | |||||| |||||| ||||||| | ||  ||||||| ||||||| |||||||||||    
T  48170642 gttttgggtatgatcagttaagagatgattacttagtggtttcagtgtcctgtgatccaaccttagttcattgttattcgcgtttggaatttttctcatt 48170543  T
Q  381 gagagataat 390  Q
     |||||||||    
T  48170542 aagagataat 48170533  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 322
Target Start/End: Complemental strand, 48147876 - 48147756
Alignment:
Q  202 tggaatccatccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaattaa 301  Q
    ||||||||||||||||||  | |||  ||| |||||||||| ||| ||||||  || ||||| || | ||||| |||| |||| ||||||||||| ||||    
T  48147876 tggaatccatccaccggagctaacaagaaaatacctttgtctccttttggttccaatttagatgcagcatattactatggttttgggtatgaccagttaa 48147777  T
Q  302 aagatgattacttggtggttt 322  Q
     ||||||||||||||||||||    
T  48147776 cagatgattacttggtggttt 48147756  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 50251011 - 50250909
Alignment:
Q  140 ttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagtaccttt 239  Q
    |||||||| |||||||||||||||| ||| || ||||  ||| || ||||| |||||| ||||||||||||||||||||  |||||| | || |||||||    
T  50251011 ttgaaattaaaggttcatgtagaggatttatatttttccactgtttttcaagcctctacctatggaatccatccaccgggcttcacatacaaataccttt 50250912  T
Q  240 gtc 242  Q
    |||    
T  50250911 gtc 50250909  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 404
Target Start/End: Original strand, 48852690 - 48852790
Alignment:
Q  304 gatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcattgagagataatgtgtggaaggaaa 403  Q
    |||||||||||||| |||||||||||||||||| | ||||||| |||| |||  ||   ||| ||||||||||||||||||| |||||  ||||| ||||    
T  48852690 gatgattacttggtagttttaatgtcctatgatacaaccttagctaatgtttcatcacatttagagtttttctcattgagagctaatgcatggaaagaaa 48852789  T
Q  404 t 404  Q
    |    
T  48852790 t 48852790  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 48898794 - 48898834
Alignment:
Q  364 ttggagtttttctcattgagagataatgtgtggaaggaaat 404  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48898794 ttggagtttttctcattgagagataatgtgtggaaggaaat 48898834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 330
Target Start/End: Complemental strand, 48705527 - 48705390
Alignment:
Q  193 ctctatctatggaatccatccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatg 292  Q
    ||||| || ||||||||||| || |||||||||| | || |||||||||| ||| ||||||   | ||||| || ||||||||| || |||| || ||||    
T  48705527 ctctacctgtggaatccatctactggatttcacaaacaaatacctttgtcaccttttggttccgatttagatgcagaatatttccatggttttggatatg 48705428  T
Q  293 accaattaaaagatgattacttggtggttttaatgtcc 330  Q
    | || | || ||||||||||||||| |||| |||||||    
T  48705427 atcagtcaacagatgattacttggttgtttcaatgtcc 48705390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 48891279 - 48891376
Alignment:
Q  153 ttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagtacctttgtcccctattg 250  Q
    |||||||||||| |||||||||||| |   | | |||||| ||||| |||||||||||||||| ||| |||||| | || |||||||||| |||||||    
T  48891279 ttcatgtagagggtttgtacttttgcatactaactcaaacatctatgtatggaatccatccactggacttcacaaacaaatacctttgtctcctattg 48891376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 335
Target Start/End: Original strand, 48898694 - 48898759
Alignment:
Q  270 atatttctatagtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcctatga 335  Q
    |||||||||| |||| |||||||| || |||| |||||||||||| ||||||||| ||||||||||    
T  48898694 atatttctatggttttgggtatgatcagttaacagatgattacttagtggttttattgtcctatga 48898759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 45366489 - 45366402
Alignment:
Q  90 ttctgcttcactcaatgttgattttctacatccacaaaatcattctgattttgaaattgaaggttcatgtagaggctttgtacttttg 177  Q
    |||||||||||||||| || ||||||| | |||  ||  | |||||||| || ||||| |||||||||||||||||||| ||||||||    
T  45366489 ttctgcttcactcaatcttcattttctgcttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttg 45366402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 215
Target Start/End: Complemental strand, 45372350 - 45372215
Alignment:
Q  80 atgattctacttctgcttcactcaatgttgattttctacatccacaaaatcattctgattttgaaattgaaggttcatgtagaggctttgtacttttgaa 179  Q
    |||||||| ||||||||||||| ||  ||  |||| |  |||| |||  ||||| |||| |||||||| |||||||||||||||| ||| || ||||| |    
T  45372350 atgattctgcttctgcttcactaaaccttagttttgtggatccccaatctcattttgatcttgaaattaaaggttcatgtagagggtttatatttttgca 45372251  T
Q  180 ctattattcaaacctctatctatggaatccatccac 215  Q
       | |||||| | ||||||||||||||||||||||    
T  45372250 tggtaattcaaccttctatctatggaatccatccac 45372215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 48852530 - 48852619
Alignment:
Q  153 ttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagtacctttgtc 242  Q
    |||||||||||||||| || ||||| ||  || |||| |  | |||||||||||||||||||||||| |||||| | || ||||||||||    
T  48852530 ttcatgtagaggctttatatttttgcaccgttcttcagagatttatctatggaatccatccaccggagttcacaaacaaatacctttgtc 48852619  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 48735469 - 48735421
Alignment:
Q  274 ttctatagtttcgggtatgaccaattaaaagatgattacttggtggttt 322  Q
    |||||| |||| ||||||||||| |||| ||||||||||||||||||||    
T  48735469 ttctatggttttgggtatgaccatttaacagatgattacttggtggttt 48735421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 37827212 - 37827129
Alignment:
Q  143 aaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcaca 226  Q
    ||||| |||||||| ||||||| |||||| ||||| ||  || || |||| ||||  |||||||||||||||| ||||||||||    
T  37827212 aaattaaaggttcaggtagagggtttgtatttttgcaccgttctttaaacatctacatatggaatccatccactggatttcaca 37827129  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 328
Target Start/End: Complemental strand, 45385044 - 45384901
Alignment:
Q  185 attcaaacctctatctatggaatccatccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagttt 284  Q
    |||||| ||| |||||||||||||||| ||   || |||||| | || |||||||||| ||| ||||||  || |||||  | || ||||||||| ||||    
T  45385044 attcaagcctttatctatggaatccattcattagagttcacaaagaaatacctttgtctccttttggttctaatttagatacagattatttctatggttt 45384945  T
Q  285 cgggtatgaccaattaaaagatgattacttggtggttttaatgt 328  Q
     |||||||| || | || | ||||||| |||||||||| |||||    
T  45384944 tgggtatgatcagtcaacaaatgattatttggtggtttcaatgt 45384901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 7877738 - 7877800
Alignment:
Q  289 tatgaccaattaaaagatgattacttggtggttttaatgtcctatgatcccaccttagataat 351  Q
    |||||||||| || |||||||||||||||||||| | |||||||| |||| ||| ||| ||||    
T  7877738 tatgaccaatcaagagatgattacttggtggtttcattgtcctataatccaaccatagttaat 7877800  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 43596446 - 43596406
Alignment:
Q  350 atatttattcgtgtttggagtttttctcattgagagataat 390  Q
    ||||||||| | |||||||| ||||||||||||||||||||    
T  43596446 atatttatttgagtttggagcttttctcattgagagataat 43596406  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 48902802 - 48902878
Alignment:
Q  150 aggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcaca 226  Q
    ||||||||| ||||| |||||||||||| ||| || ||  | | ||||| |||||||||| ||||| ||||||||||    
T  48902802 aggttcatgcagagggtttgtacttttgcactgttctttcaccatctatttatggaatccttccactggatttcaca 48902878  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 49041155 - 49041115
Alignment:
Q  364 ttggagtttttctcattgagagataatgtgtggaaggaaat 404  Q
    |||||| |||||||||||| || ||||||||||||||||||    
T  49041155 ttggagattttctcattgaaagctaatgtgtggaaggaaat 49041115  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 140 - 338
Target Start/End: Complemental strand, 47452128 - 47451930
Alignment:
Q  140 ttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagtaccttt 239  Q
    |||||||| |||||||||||||||| ||| ||||||| |  | || ||||||| ||||  |||||||||||||||| ||| |||||| | || |||||||    
T  47452128 ttgaaattaaaggttcatgtagagggtttatacttttaagttgttcttcaaacatctacatatggaatccatccactggagttcacaaacaaataccttt 47452029  T
Q  240 gtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcctatgatcc 338  Q
    | | ||| ||||||  ||  |||| ||  | ||||| ||| | || ||||||||| | |||| |||||||||||| ||||||||||||||| |||||||    
T  47452028 gcctccttttggttccaatgtagatgcaaattatttttattggtttgggtatgacgagttaacagatgattacttagtggttttaatgtccgatgatcc 47451930  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 11015596 - 11015544
Alignment:
Q  281 gtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcctat 333  Q
    |||| ||||||||||| |||| |||||||||||||||||| | | ||||||||    
T  11015596 gttttgggtatgaccatttaagagatgattacttggtggtatcagtgtcctat 11015544  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 11015740 - 11015668
Alignment:
Q  140 ttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatc 212  Q
    |||||||| || ||||||||||||| ||| || ||||||  | || ||||||| |||| ||||||||||||||    
T  11015740 ttgaaattaaaagttcatgtagaggatttatagttttgacttgttcttcaaacatctacctatggaatccatc 11015668  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 335
Target Start/End: Original strand, 29696075 - 29696261
Alignment:
Q  149 aaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagtacctttgtcccctat 248  Q
    ||||||| |||||||||||| |||||||||||| ||| |||| ||||| | ||||||||||||||||||||||||||| |  | |||||||  |  | ||    
T  29696075 aaggttcgtgtagaggctttatacttttgaactgttactcaagcctctgtatatggaatccatccaccggatttcacaaacgaataccttttactacaat 29696174  T
Q  249 tggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcctatga 335  Q
    || ||  ||   ||| ||  | ||||||||| |||| ||||||||| | | || |||||||||||||||| ||| ||||||||||||    
T  29696175 tgattccaatccagatgcaaattatttctatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctatga 29696261  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 29687975 - 29688053
Alignment:
Q  150 aggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacaga 228  Q
    ||||||||||||||| ||| ||||||    |  |||||||| ||| |||||||||||||||||||||||| ||||||||    
T  29687975 aggttcatgtagaggttttatactttgctccggttattcaagcctttatctatggaatccatccaccggagttcacaga 29688053  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 247
Target Start/End: Original strand, 21015672 - 21015767
Alignment:
Q  152 gttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagtacctttgtccccta 247  Q
    ||||||||||||| ||| || ||||| || || |||||||| |||| |||||||||||||||||  || |||||| | || |||||||||| ||||    
T  21015672 gttcatgtagagggtttatatttttgcaccatgattcaaacatctacctatggaatccatccactagagttcacaaacaaatacctttgtctccta 21015767  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 404
Target Start/End: Original strand, 48883887 - 48883928
Alignment:
Q  363 tttggagtttttctcattgagagataatgtgtggaaggaaat 404  Q
    |||||||| ||||||||||||||||||| ||||||| |||||    
T  48883887 tttggagtgtttctcattgagagataatatgtggaaagaaat 48883928  T

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