View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10132_low_11 (Length: 405)
Name: NF10132_low_11
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 5 - 386
Target Start/End: Original strand, 40187842 - 40188224
Alignment:
| Q |
5 |
taattaattaattatatgccacaaggttttgaaatgattatataagctaaggcatgtcaagcatacgt-ggttggtccagttgataaggattcaattctt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
40187842 |
taattaattaattatatgccacaaggttttgaaataattatataagctaaggcatgtcaagcatacgttggttggtccagttgataagaattcaattctt |
40187941 |
T |
|
| Q |
104 |
acaaggacctgagtttgaatcttgttgccgatgtgaggatctcattgatagatatataaaatgtaattaatcatgtcaacaatctaacaactttgaggct |
203 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| || |||||||||||||||| |||||||||||| |
|
|
| T |
40187942 |
acaaggatctgagtttgaatcttgttgccgatgtgaggatctcattgacggatatataagatataagtagtcatgtcaacaatctattaactttgaggct |
40188041 |
T |
|
| Q |
204 |
tttgactctgatgagttcccgagactcgactcgtctaaactttaattcatatatnnnnnnngacaaggtacatcaaacaggtggttgaacactattatta |
303 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40188042 |
tttaactctgatgagttcccgagactcaactcgtttaaactttaattcatatataaaaaaagacaaggtacatcaaacaggtggttgaacactattatta |
40188141 |
T |
|
| Q |
304 |
gctttagctctaatcatgttggctttacgtgtgactctaacatgatacacactcatagctaaaaccacaacaaatgcaacacc |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40188142 |
gctttagctctaatcatgttggctttacgtgtgactctaacatgatacacactcatagctaaaaccacaacaaatgcaacacc |
40188224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 8108914 - 8108959
Alignment:
| Q |
104 |
acaaggacctgagtttgaatcttgttgccgatgtgaggatctcatt |
149 |
Q |
| |
|
||||| ||||||||||||||||| ||||| ||||||||| |||||| |
|
|
| T |
8108914 |
acaagaacctgagtttgaatcttattgccaatgtgaggacctcatt |
8108959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University